Penaeus vannamei (Pacific white shrimp): 113808019
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Entry
113808019 CDS
T06111
Symbol
Cpsf100
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113808019 (Cpsf100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113808019 (Cpsf100)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113808019 (Cpsf100)
U7-dependent histone pre-mRNA processing factors
113808019 (Cpsf100)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
113808019
NCBI-ProteinID:
XP_027215146
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Position
5:complement(47436858..47449936)
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AA seq
738 aa
AA seq
DB search
MTSIVKFEGVWGVGDETPHCYLLTVDDFTFLLDCGWDEKFDKSYIDRLAKILPRVDCVLI
SYSDPLHMGALPYLVGKCQLTCPVYATVPVFKMGQMFMYDWFQSHHNYDLVEHFTLDDVD
AAFELITQVKYNQSVPMRGKGIGLSISAQPAGHMIGGAIWRIIKDGEGDIVYAVDFNHKK
ERHLGGCELDKITRPSLLITDAFNASYRQERRRHRDEKLVAQLQETCRNGGNVLIATDTG
GRVLEMTHMLEQMWSTRESGLSAYSLAILSNTGYHVIHFAKQMIEWMSEKLTKAFDSLRT
NPFSFKHLKFCHNLTDLSRLPSPKVVLASFPDLECGYARELFVQWATNPKNTIILTSRTG
PDTLARRLIDNPQIRTFKLLEKRRMKLEGSELDEHYRMKREEEQQQQRIKMEEVESSSDS
ENEDGLEAGKHDIIVLHEKAGNQSMFRSRKHHPMFPFHEEKIRGDDYGEYINLEDFDISS
MKDDNKENLENLQIPYEDDDLMDIEEPPSKCVSQTVTVRVTAQVLFIDFEGRSDGESIRK
IVEAMHPLRVILVRGSPTDLQAFSQNIRSMTKAKVFTPSLGEVVNASMESHIYQVKLAES
LVSSLMLKPAGREVEVAWVDGIVSFPTESIDEAVEEGDRQVIASESQQDREMPTLSVVPA
ETAPLHNPVFINDIRLSEFKQVLSRAGISSEFNAGILWCANGTLALKKQESGSLSLEGPM
SADYFEIRELLYSQYAMI
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgacttccattgtgaagtttgagggagtgtggggtgtcggagatgagacacctcactgc
tacctcctcacagtggatgacttcaccttccttcttgactgtggctgggatgagaagttt
gataaatcttatattgatcgtcttgcaaaaattctgcctcgtgttgactgtgtcttaata
tcatattcagacccattgcatatgggtgccctgccatacttagtgggaaagtgtcaactc
acctgcccagtctatgccactgttcctgtgttcaaaatgggacagatgtttatgtatgat
tggttccagagtcatcataattatgatcttgtggaacacttcacccttgacgacgttgat
gcagcctttgaattaataacacaagtaaagtacaatcagagtgtcccaatgagaggaaaa
ggtattggcctgagtatttcagcacagccagctggccacatgattggaggggccatttgg
agaatcattaaagacggggagggggatattgtgtatgcagtagacttcaatcacaagaaa
gaaagacatctgggtgggtgtgaattggacaaaatcacccggccttcgctcctcatcact
gacgcctttaacgcttcctacagacaagagagaagacgtcatagagatgaaaagcttgtc
gcccagcttcaagagacctgtcggaatggaggcaacgttttaatagccactgacacaggt
gggcgggttttggaaatgacgcacatgctggagcagatgtggagtacgcgagagagtggg
ctgtcagcctattcacttgctatcttatccaacacaggctaccatgttatacactttgca
aaacagatgattgaatggatgagtgagaaactcaccaaagcctttgattccttgcgtaca
aatccgtttagcttcaagcacctgaagttttgccacaatctgaccgacttgagcagactg
ccttcacccaaggtggtgctggctagctttcctgacctggagtgtggatacgcgagagag
ctgtttgttcagtgggcaacaaacccaaagaacacaattatcctaacttccagaactgga
ccagacacgttagccagacgactcatcgacaacccacagatcagaactttcaagcttctg
gagaagagaagaatgaagctggaaggatctgagctcgatgaacactaccgcatgaagcga
gaggaagaacagcaacagcagagaattaagatggaagaagttgagtcctcaagtgacagt
gaaaacgaagatggtctggaggctggaaagcacgacattattgtcttgcacgaaaaggct
ggcaaccagagcatgtttagaagtcggaaacatcatccaatgttccccttccatgaagaa
aagattagaggagacgattatggagaatacatcaacttggaagactttgacattagttcc
atgaaagatgacaacaaagagaatttggagaacttgcaaataccatatgaagacgatgac
ctaatggacatcgaggagccaccctccaagtgtgtctctcagacagtaacagtaagggtg
acagcccaagttctcttcattgacttcgagggtaggagcgacggagagagtatacggaaa
attgtcgaggccatgcaccctttgcgagtaatattggtgcgtggttccccgactgacctc
caagctttttcgcaaaatattagaagcatgaccaaagccaaggtgttcaccccaagcctt
ggagaagttgtcaatgcctccatggagtcgcacatttatcaggtcaaactcgcagaatca
ttagtatcatccttgatgctgaagcctgctggaagggaggtagaagtggcctgggtggat
ggtattgtttccttcccaacggagagtattgacgaggcagtcgaggagggagatagacaa
gttattgcaagcgaaagccagcaggatagggagatgccaacactcagtgtggttcctgca
gagacagcaccgctgcataacccagtcttcatcaatgatattagactcagtgagttcaag
caggttctgagtcgagctgggataagttcagagttcaatgctggtattctttggtgtgca
aatggaacactggccttgaagaaacaagaatctggcagcctgtctctggaagggccgatg
agtgccgattactttgaaattcgcgaacttctctactcacaatatgcaatgatttaa
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