Penaeus vannamei (Pacific white shrimp): 113808245
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Entry
113808245 CDS
T06111
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113808245 (Ddx1)
03016 Transfer RNA biogenesis [BR:
pvm03016
]
113808245 (Ddx1)
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113808245 (Ddx1)
Spliceosome [BR:
pvm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113808245 (Ddx1)
Transfer RNA biogenesis [BR:
pvm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113808245 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Motif
Other DBs
NCBI-GeneID:
113808245
NCBI-ProteinID:
XP_069986683
LinkDB
All DBs
Position
15:27622479..27644059
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AA seq
735 aa
AA seq
DB search
MAAFEEMGVMPEIAKAVEEMDWTLPTDVQNEAVPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDIQQGKTSKVNKEVSPHWLMSFFDRDAGMAVTPDGLRCQSRDPKAWQGVRC
TKGVVGKGKYYYEATVSDEGLCRVGWATPQAALDLGTCKAGFGFGGTGKKSNCRQFDDFG
EPFGLKDVIGCYLDLDAMEIRYSKNGTDLGKAFTLRSEFKNATFLPAVVLKNAEMSFNFG
ATEFKYPPKGGFMAICQAPKDCTVTSGVRGGDKPQKVENNAPQAIIIEPSRELAEQTLTQ
LKLFHKHLDNPVVRDLLVVGGIPVKDQIAALNSGIDIVCGTPGRLEDLINTGQLSLQSCK
FFVLDEADGLLKQGHERLVNNIHSAIPKITSDGKRLQMIVCSATLHSFEVKRMAERLMHF
PTWVDLKGEDAVPETVHHVVVTVDPRADTTWSTLRRHIPTDGVHQKDNVRPGNNTPETLS
EAVKMLKGEYCLKAIDTHKMDKALIFCRTKLDCDNLERYFNQIGGGPKNPANPYSCVCLH
GDRKPNERKANLETFKNGRVRFLICTDVAARGIDVNGLPFIINVTLPDEKSNYVHRIGRV
GRAERMGLAISIVAAVPEKVWYHGEWCPTRGRNCYNTRLTTEKGCCTWYNEPQYLADIEE
HLGVTIQQVDKEMKVPVDEFDGKVVYGEKRAAAGSNYQTHVEQLAPAVKELADLERQTQT
IYLKRQYGKEYPWTR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggcagctttcgaagaaatgggcgtaatgccagagattgcaaaagctgttgaggagatg
gattggacactccctacggatgtgcagaatgaagccgtgcccctcatcttaggaggtgga
gatgtactgatggctgcagaaacaggcagtggcaagactggagctttttgcctgcccatc
ttgcagatcgtgtgggagacgctcaaggacatccagcagggcaagacgtccaaggtcaac
aaagaagtctcaccccactggcttatgagcttctttgaccgtgatgcgggcatggcagtg
acccctgatggtctgcggtgccagtcacgtgaccccaaggcctggcagggtgtccggtgc
actaagggggttgtgggcaagggcaagtactactacgaggccactgtatctgatgaaggg
ctgtgccgtgttggatgggcaacacctcaggctgccctggacttaggcacatgcaaggca
gggtttggcttcggtggaactggcaagaagtctaactgccgccagtttgatgactttggt
gaaccctttgggctgaaagatgtgataggctgctatttggacctagacgccatggagatc
cgctacagtaagaatgggacggaccttggcaaggccttcacccttcgtagcgagttcaag
aatgccaccttcctcccagctgttgtactgaagaatgcagagatgtctttcaactttggg
gcaacagaattcaagtaccctccaaaggggggctttatggccatctgtcaggctcctaag
gattgcacagtaacttcaggtgtcaggggcggagacaagccacagaaggtggagaataac
gctcctcaagccatcattattgagccctctcgagagctagcggagcagaccctgacacaa
ctcaaattgttccacaaacacctggacaatcctgtggtacgtgacttgttggtggtaggt
ggcattccagtgaaagaccagattgcagctctcaactcgggcatcgacattgtgtgtggc
actcccggtcgattggaggacctcatcaacacaggacagctctcactccagtcgtgcaag
tttttcgttcttgatgaagctgatggtctgctgaaacagggacatgaacgccttgttaat
aacatccacagtgccatccctaagatcacatctgatggaaagaggctccagatgattgtc
tgttctgcaacactgcattcctttgaggtcaagcgcatggctgaacgcctgatgcacttc
ccaacgtgggttgaccttaagggagaagacgctgttcctgagactgtccaccatgttgtt
gttacggttgacccgcgtgctgacaccacctggagtaccttgcgacgccatatccctaca
gatggagtacaccagaaggacaatgtccggccaggaaacaatacgcccgaaaccctgagt
gaagctgtgaagatgctgaaaggagagtactgtctcaaagccattgacacccacaagatg
gacaaagcgctgatcttctgccgtacaaagcttgactgtgataacctagagcgctatttc
aatcagattggtggaggacccaagaatcctgccaatccctactcctgtgtatgcctccat
ggtgatcgtaaacccaacgaacgtaaagctaatcttgaaaccttcaagaatgggcgagtc
aggttcctcatttgcactgatgttgctgcccgtggaattgatgtcaacggcttgcccttc
attatcaatgtgactctgccagatgagaagagcaactacgtgcatcgtattggccgtgtg
ggtcgagcagagaggatgggtctggccatctccattgttgcagctgtgccagagaaagtg
tggtaccatggtgaatggtgtccaacaagagggcgtaactgttacaacactcgcttgacg
acagaaaaaggctgttgtacatggtataatgaaccccagtacttggctgacattgaggaa
cacctgggagtaaccattcagcaggtggacaaggagatgaaggtccctgtggatgaattt
gacgggaaggttgtctatggtgagaagagggcagctgcaggttcaaactaccagacccat
gtggaacagcttgcacctgctgtgaaggaactagcagaccttgagagacaaacacagacc
atctacctgaaacggcagtatggaaaggagtatccctggactcgataa
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