Penaeus vannamei (Pacific white shrimp): 113808258
Help
Entry
113808258 CDS
T06111
Symbol
Rubicon
Name
(RefSeq) run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1
KO
K19330
run domain Beclin-1 interacting and cysteine-rich containing protein
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113808258 (Rubicon)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvm04131
]
113808258 (Rubicon)
Membrane trafficking [BR:
pvm04131
]
Autophagy
Other autophagy associated proteins
Others
113808258 (Rubicon)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RH_dom
RUBC_PIKBD
RUN
Motif
Other DBs
NCBI-GeneID:
113808258
NCBI-ProteinID:
XP_069985953
LinkDB
All DBs
Position
14:complement(31444889..31461776)
Genome browser
AA seq
1320 aa
AA seq
DB search
MDTTRLWHVTKNRRQLQCTLRLRCARFAIAKSVYHLSKSKKKKKVTRVEYQKTRIGPQPT
KHGSADEFDVQRNKDDSGKLQTMTEGVKEPHCAHPKHRSCACGHRTEDWQHGNVPSVAIR
DQCVAIRTLLSDLVNTVGAVLTSRPKHVWQVYGGFQRIYEATKNIFYHGCIHSDTQGNAD
IWPFVVGLRVLSPVLGPYVEVSTVSKPADEWIRSSLQKLQLAAKVAALTIDKDYVKKHYQ
PWALLCSPAHTGAVIKCLQALEENSQDLLADIDPKLLVGTQWMSLGTAVESIHRRPSGLP
RHLLDGHSLEKKNKSPEKRDASSLPTSPITDRNWSPMWPSQSDDEKRRGERGFVETPKND
RAASKYVTNPVNINRTCSRRLFPNDNFVPLRRGKSEASIKVFPKGQFHPWEQPVRKDQQE
DRNITLMTRESPDGSSGSSDWPATSPVSHPPSFSNKDISEISSSTIAKLVQGKSPAESVN
GTGARPKDSVSPQPLVIQQFHDISDSGSGPRSNISPSLLQVDYGGENTASEGEASSLYSL
HNQRAGLGFRTPQLRRRASSWRMMSAPADSDQDSEDTTDGSVPQASRRRRRLTPSQQRSG
LSVKLLVDSRGILMADETQGIEEQKGSQEKVSETFVADLPSKGQNNPESSSLPHHSTLDP
SSELVSQTSKINKPERTLQISDQVSSVVPHMTSTPVTAALHPDTTDGIAFSAPGRVSKPS
NLEIPEITKSKKKTHGRSRSDGAQELVGKLRLSTSNTEPTLESGVPGKNGGSKEDVGSIL
PNPVRKRFMEDGGQSITPAADYGFFPRPQPGQSLIGFLSSKEFHKPYAELDRENAHFNIS
EAVIAALTQMQFDAWTRDINTNPITAEDSDEEIRNLQARIREKRRQKLSGTAVSASPSTN
TLTESTSDPQRWVRSQPLKVESMSCTTDNSVCESPQSSTYNSESDLLSDFEEEDHNGSSV
YREETTLPLSRKTSVSDSIIFKGDLTAENVALNLLKHFSDQKLPKASELEWLVSEQEAPQ
KLLPLPTSVAVSPDDSGAPKDIQQPQTQLRGTSEWAPPRPQLILTLHTNTKRSVLMGTQG
WRCAGCGMRVSERLSRHFRLCHYLGRYFCTTCHSNQTAIIPAKVLHKWDFKLYAVASFSS
ELLERMRSDPLFNVGALNPRLYKRCRHLHQTHIYRLQLYYTLPYINTCSRGLSERTMLGK
LPQHWANDPHVYSLDDLLAIKGGQLVAEIKDVTSVCISHIAKCQVCLGRGFICEICGRGE
AIFPFQLDSTALCECCNACFHNGCFSPGRCPRCIRRESRRSSREVIEKQDSVESSSSKES
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggacactacaaggttatggcatgtgacaaagaacaggcggcagttgcagtgtacactt
cgtttgcgttgtgcacgttttgcaattgctaagtccgtatatcatctatcaaaaagtaaa
aaaaaaaaaaaagtcacacgagttgaataccaaaaaacccgcatcggaccacaaccgacc
aaacacggatcagctgacgagtttgacgtccaacgcaacaaagatgattctggcaagctg
cagaccatgacagagggtgtcaaagaaccacactgtgcccatcctaaacaccgctcctgt
gcatgtggccataggactgaggactggcaacatggcaacgtgcccagtgttgccatcagg
gatcagtgtgtggccattagaacgttgctctcagatcttgtgaataccgtgggagctgta
ttaacttcaagaccaaaacatgtgtggcaggtatatggaggcttccagaggatatacgag
gcaacaaaaaatattttttatcatggttgtatacattctgatactcagggtaatgcagat
atatggccctttgtggttggactgcgggtactcagtccagtgttggggccatatgtggaa
gtctctactgtttccaagccggctgatgagtggatccgttcttccctgcaaaagcttcaa
ttggcagcaaaggttgcagctttaactattgacaaggattatgtaaagaaacactaccaa
ccctgggccttattatgttcacctgctcatactggagccgttattaaatgtcttcaagcc
ttagaagaaaattcacaagaccttttagcagacatagatccaaaattgttagtaggaaca
caatggatgtctcttggtactgcagtcgagtctattcatcgcaggccttctggtttacct
cgacacttattagatggtcattcactggaaaagaaaaataaaagcccagaaaaaagagat
gcatcatccttaccaaccagtcccataactgataggaactggtctcctatgtggccttct
caaagtgacgatgaaaagaggagaggagaaagagggtttgttgagactcccaagaatgat
agagctgctagtaaatatgtaaccaatcctgtaaatattaacagaacttgcagtcggagg
ctgttcccaaatgataactttgtgcctttgcgaagaggaaaatcagaggcatccatcaag
gtcttccctaagggacagtttcatccctgggaacagccagtgaggaaagaccagcaggag
gaccgcaacataactctcatgaccagagagagtccggatggcagctcagggagctctgac
tggcctgcaacaagccctgtaagtcaccctccatcattcagcaacaaagatatttctgaa
atatctagttcaacaatagccaagcttgtccaaggaaaatctccagctgaaagtgtaaat
ggaactggagcaagaccaaaggactcagtaagtcctcagccattagtcattcagcagttc
catgatataagcgatagtggaagtggtcctagaagcaatatttctccaagtttattgcaa
gttgactatggaggagagaatactgctagtgaaggagaggcttcctcattatattcttta
cataatcagagagctggtcttggattcaggacaccgcaactccgccgtcgagctagcagt
tggcgaatgatgtcagcacctgcagatagtgaccaggatagtgaggacaccacagatggg
tctgtgcctcaagcctcaagacgtagaagacgactcacaccttctcagcagcgttcagga
ttgtctgtgaaattgttagtagacagtcgtggcattttaatggctgatgaaactcaggga
atagaagaacaaaagggctcccaggaaaaagtatctgaaacctttgttgcagatctgccg
tccaaaggacaaaataatccagaatcatcatcacttcctcatcattccactttggatccg
tcatcagagctggtatcacaaacttccaaaataaacaaacctgaaagaactctccaaatc
tcagatcaagtcagcagtgttgttccacatatgacatcaacaccagtgacagcagctctt
catccagacaccactgatggcatagcctttagtgcaccaggcagagtctccaaaccctca
aacttggaaatcccagagattaccaaatcaaagaagaagactcacgggcgttcaagatca
gatggagctcaagaactggttggaaaattaagactttctacttccaatactgaaccaact
ctagagtcaggagtaccagggaaaaatgggggaagcaaggaagatgttggttcaatactg
ccaaatccagttcgcaagagatttatggaagatggaggccaaagtattactccagctgca
gattatgggttcttccctcggccacagcctggccaaagtctcattggatttctgtcttca
aaggaatttcataagccatatgcagaacttgacagagaaaatgctcatttcaatatctct
gaagctgtgattgctgctttaacacagatgcaatttgatgcttggactcgggatataaat
acaaaccccatcacggccgaggacagtgatgaggagattcgtaatctacaagctcgcata
agggaaaagcgccgccagaaactctcagggactgcagtttctgcttcaccatctacaaac
acacttacagaatctacttctgatccacaaagatgggtccggagtcaacctttgaaagtt
gaaagtatgtcatgcacaacagacaacagtgtgtgtgaatccccacaaagttcaacttac
aatagtgagagtgatctcctgtcagactttgaggaggaggatcataatgggtcttcagta
tatagagaagagactacgctacctctttcaaggaagacttctgtgagtgactccatcatt
ttcaagggtgatttaacagcagagaatgttgctctcaaccttctgaaacattttagtgac
caaaaacttccaaaggcctcagagctagaatggctggtgtcagaacaagaagctccgcaa
aagcttctgccattaccaaccagtgttgcagttagtcctgatgacagtggtgcccctaag
gatatccagcagccacagacacaactaaggggcacctctgaatgggcacctccaagacca
cagcttatcttgaccttgcacaccaacacaaaacgctctgtgttaatggggactcaagga
tggaggtgtgctgggtgtggaatgcgtgtatctgaacgtctcagtcgacatttccgatta
tgccattatctcggtcgttacttctgtacaacttgccatagtaaccaaactgccattatt
cctgccaaagtccttcataaatgggatttcaaattgtatgctgttgcaagcttttcctcc
gagctactggagcggatgagaagtgatccactcttcaacgttggagctctcaaccctcgg
ttgtacaagcgttgtcgtcatctgcatcagacccacatttatcgtctgcagctatattat
actttgccatatataaatacatgtagtaggggtctaagtgagaggacaatgttaggaaaa
cttcctcaacactgggcaaatgacccacatgtttactccctggatgaccttctggcaatc
aaaggagggcagctggtggcagagataaaggatgtgacgtcagtttgcattagtcacatt
gctaagtgtcaggtctgtttagggagaggcttcatttgtgaaatttgtggacgtggagag
gctatattcccattccagttggactcgacagcactctgtgaatgctgcaatgcctgcttc
cacaatggttgcttctcgccaggacgatgcccgagatgcatcaggagggaatcaagaaga
tcgtctcgggaagttattgagaagcaggactcagtggaatcgtcttcaagcaaagagtca
tga
DBGET
integrated database retrieval system
