Penaeus vannamei (Pacific white shrimp): 113808973
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Entry
113808973 CDS
T06111
Symbol
Hel25E
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03013
Nucleocytoplasmic transport
pvm03015
mRNA surveillance pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113808973 (Hel25E)
09122 Translation
03013 Nucleocytoplasmic transport
113808973 (Hel25E)
03015 mRNA surveillance pathway
113808973 (Hel25E)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113808973 (Hel25E)
03041 Spliceosome [BR:
pvm03041
]
113808973 (Hel25E)
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113808973 (Hel25E)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113808973 (Hel25E)
Spliceosome [BR:
pvm03041
]
Complex C
Other components
EJC/TREX
113808973 (Hel25E)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113808973 (Hel25E)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
113808973
NCBI-ProteinID:
XP_027216258
LinkDB
All DBs
Position
29:complement(29588122..29597845)
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AA seq
497 aa
AA seq
DB search
MYMYKIEYKKATTYQSQKILVRQTYDNQEYDNSRCKAWYSVASSHYTLRLGLRTPYRRAC
VYPLLSEQIRMADQEPELLDYEEDEDAVEAGVGETTEAAPAKKDVKGTYVSIHSSGFRDF
LLKPEILRSIVDCGFEHPSEVQHECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIDPV
DGQVSVLVMCHTRELAYQIAKEYERFSKYMPNAKVGVFFGGLNVQKDEETLKNNCPHIVV
GTPGRVLALVRNKKLNLRHLKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSAT
LSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNRKLFELLDALEFNQV
VIFVKSVQRCMALAQLLVEQNFPAIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRG
MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKILNEVQERFDVN
ITELPDEIELSSYIEGR
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtacatgtataaaattgagtataaaaaagcaacaacatatcaatcacaaaaaatcctg
gtccgacagacgtacgataatcaagagtacgacaattcgcggtgcaaagcttggtactcc
gtcgcctcatcgcactacacgctgcggcttggactgaggacgccatatcgacgagcttgt
gtttacccgttactttccgaacaaatcagaatggccgaccaggagcctgaacttctcgac
tacgaggaggatgaggatgcggtggaggcaggagtaggagagacaaccgaggctgcccca
gccaaaaaggatgtgaagggtacctatgtgtccatccattcctcaggcttcagggatttc
ctgctgaagccagagatcctaagatccattgtagactgtggctttgagcatccttcagaa
gtgcagcatgagtgcatccctcaagctgtgttgggcatggacatcttgggccaagctaaa
tcgggtatgggaaagactgcagtgtttgtgttggcaacacttcagcagattgaccctgta
gatggtcaggtgtcagtgctggtaatgtgtcatacacgagagttggcttaccagatagcc
aaggagtatgagagattcagcaagtacatgcccaacgccaaggtgggggtgttcttcgga
ggcctgaatgttcagaaggacgaagagaccctcaagaacaactgcccccacattgttgtc
ggtactcctggccgtgttcttgctctggtgcgcaacaagaagctcaatctccgccatttg
aaacactttgtgttggatgaatgtgacaagatgctggaacagcttgatatgcgacgagat
gtgcaagaaatcttccgtaatactccacatgaaaagcaagtgatgatgttcagcgccacc
ttgagcaaggagatccgccccgtgtgcaagaagtttatgcaagatcccatggaagtatat
gttgatgatgaagccaagttgactcttcatggtctgcagcagcactacgttaaaatcaag
gaaaacgagaagaatcgcaaattgtttgaattacttgatgctttagagttcaaccaggtt
gtcatatttgttaagtctgtccagagatgcatggccttggcacagctgttggttgaacag
aacttcccagccattgctatccaccgtgccatgcagcaggaggagagactcagccgttac
cagcagtttaaggacttccagaagcgtattctggtggcaacaaacttgtttggtagagga
atggatattgagcgagtgaacatcgtattcaactatgatatgcctgaagacagtgacaca
taccttcatagagtagcaagagctggtcgattcggaaccaagggtttagctgtcacattt
gtgagtgaagagagtgacgcaaagattttgaatgaggttcaggagagattcgatgtaaac
atcacagagctacctgacgagattgagctcagctcatacattgaaggtcgttaa
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