Penaeus vannamei (Pacific white shrimp): 113809233
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Entry
113809233 CDS
T06111
Symbol
Chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvm03036
]
113809233 (Chd1)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113809233 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
HTH_Hrp3
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
113809233
NCBI-ProteinID:
XP_027216566
LinkDB
All DBs
Position
40:23292416..23332603
Genome browser
AA seq
1836 aa
AA seq
DB search
MREHIQDSGSDSEEERSGSGSGSDNDSDNNDNDSKSGSGSDSGSGSGSGSGSGSGSSSDS
SDNNSDSDSDNNKQSGSDDEEGDEDEDEEDNDEKDENDDEDGEDQEDEHDRSGSSSYSRG
SSGKGGSRKGGKEDLKSSTLQCWEENPDIYGIRRSARERKEPERMNVEHENNAKKHHRRR
KSSSQWNSSEQSDSENSDYESPKPKRKPPSKKPTSSSSSSKKKSSSHKKKKSSSEGSDSD
DASKRRGSNRATKGVSYKEAESEEEEEDEEDMIEVDWTQTQPKEEDENLQTIEKVLEHRI
GKKGAVGMQTYIYEVEKNGDPNSDFDPNDPEQVETQYLIKWKGWAHLHNTWESEESLKTQ
KYNAFQVKGMKKLENYLRREEEMSIWRHRASPEEVEYMEIQSELEKELYSSHIRAERIFA
EAEENGNHYFYVKWENLPYAEATWELESLVRERFLSQLESFEVREKSSCTPKQCPALKHR
PKFSAMKVQPDYLGGENENLELRDYQMDGVNWLIHAWCKHNSVILADEMGLGKTIQTISF
LSYLFHTHAMYGPFLLVLPLSTLNAWQREFNNWAPDINVIVYIGDRDSRRIVRDYEWTTS
SKRLKFNAVLTTYEILLRDKEDLRDSCQWACLVVDEAHRLKNEESQLYQALKEFRSNHRL
LITGTPLQNSLKELWALLHFIMPEKFDDWDYFESQHDSENMRKGFHRLHKQLEPFLLRRV
KKDVEKSLPAKVEQILRVDMMQQQKQFYKWILTKNYDMLKKGNRGSTSSFVNIVMELKKC
CNHSHLIKPPEDTISTEILQQLLRGSGKLMLLDKLLVRLRETGHRVLIFSQMVRMLDILA
QYLQYRRFPFQRLDGSIKGELRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVVI
FDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTKNSIEENIIERAKQKMVLDHLVIQSMD
TSGRTVFNKKMSSSNSNPFNREELNAILKFGAEELFKDDEENEEEPMCDIDEILRRAETR
DEAPSMAGDELLSAFKVASFNLDEEEEVSKLDSIADESTKDWDEIIPEDFRTKVEEEEKQ
KEMADLYLPPRKRKTVNQAGQKEDESPRTKKKRQESESSNDDTDDDKPRKRGRPRMHHKE
TIKGFTDAEVRRFFKSFKKFSNPLRRLDTIAHDADLREKPISDLRKVGETIYERCQDAMK
EHESQKENEKTPEVNGQPKQRRDRGPSFKLSGVAINAKTTLATIEELAPLDHVVPHAPVE
RASWTLQMKRVKDAHWDVPWGIQDDSRLLRGIYEYGMGSWEQIKGDPALNLDDKILLGGE
TKPQGKHLESRAQYLLKLIKKQMGLGPAKLTPQAKIHKPLKLRKTKEPKGISKAIIENDD
SSDDEKNTSQLSGVSLKKAPKVNEEPKEHKEPKESKSKARDIKEEKEDGEKAKVKEENDA
KDEKPKKKKEKKEKKDKKEKEKKTDGPMHITANGQPIPLDDSKELDKTHPLWDECKEKMR
PMKRALKTLDNPNESLTQEEQIQQTRRCLIQIGDHIERCLENIKDPESMKEWKSLLWQFV
SKFTEYDSKKLHKLYKKNKKIQEEKKEADKDKDHDKEKKEDKRDKKHDKEHDKKRDKGGS
AGGGEGGGSGDKHHDKKRKMEESGAHSPSKKPYNGWGPRGREGDKWSDRDKSRDRDRDRD
RSDRDRPRDRDRDRDRNYPRNHPGPGREWHNSPGGRDFKESRYPQDYKREGGGYHRDGYK
PHGYHRPGGGDWGNRPHHGKHPNYGPPSGFGPVHYPPHPSAPGIYGAHPQNIRMPHGPPQ
YGGHRPEWKDRGDRADRAPQQDWGKERSDRAPPPSY
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atgagggagcatatacaagacagcggctcagacagtgaagaggagcggtcgggctccggt
agtggctccgacaatgactctgacaacaatgacaacgacagcaagtctgggtcaggcagt
gactccggctctggaagtgggagtgggagcggctcgggttcgggcagttcctccgactcc
tccgacaacaactctgactctgactccgacaacaacaagcagtcgggttcagacgacgag
gaaggagatgaggatgaggatgaggaggataacgatgaaaaggatgaaaatgacgatgag
gatggagaggaccaggaggatgagcatgaccgctcgggcagctcatcctacagcaggggt
agcagtggaaagggtggctcgcgcaaaggagggaaggaggacctgaagtcgagtactttg
cagtgttgggaggaaaatcccgacatctacgggataagacgctcagcgcgcgagaggaag
gagccggagcgcatgaacgtggagcacgagaacaatgctaagaagcaccacaggaggagg
aagagctctagtcagtggaatagctctgagcagtcggacagcgagaactccgactatgag
tccccaaagcctaagcggaagccccccagcaaaaagccaacctcgtcatcctcatcatcc
aagaaaaagtcatcatcgcataaaaagaagaagagcagcagtgaaggcagtgatagtgat
gatgctagtaaaaggcgaggctcaaaccgagcaacaaagggagtcagctataaggaggca
gagagtgaagaagaggaagaggacgaggaagacatgattgaggttgactggacacagaca
caacccaaagaagaagatgagaatttgcagaccattgagaaggttctggagcacaggatc
ggcaaaaagggagctgtgggtatgcagacctacatctatgaggtggagaagaacggcgac
ccaaactcagactttgatcccaacgaccctgagcaggtggagacacagtacctgataaag
tggaagggctgggcacacctccacaacacctgggagtccgaggagtcgctcaaaacgcag
aagtacaatgcattccaggtgaagggcatgaagaagctggagaactacttgcgcagggag
gaggagatgtccatttggaggcaccgcgcatccccggaggaagtcgagtacatggagatc
cagtctgagcttgagaaggagctctattcatcacacattagagctgagaggatcttcgct
gaagcagaggaaaatggcaaccattatttctatgtgaaatgggaaaatctcccctatgca
gaggccacgtgggagctggaatctttagttcgagaaagatttttgtctcaacttgagagt
ttcgaagtgcgggaaaaatcgtcttgcactccaaagcagtgccctgcactgaagcacaga
ccaaagttctcagcaatgaaagtccaacctgattatttgggtggtgaaaatgagaatcta
gaattacgtgattaccagatggatggggtcaactggctcattcatgcttggtgtaaacac
aactccgtcatattggctgatgagatgggtctgggtaaaaccatccagactataagtttc
ctgagctatcttttccatacacacgccatgtatggtcctttcctcctagtcctgccactc
tccacccttaatgcatggcagcgggaattcaacaactgggctccagacattaatgtcatt
gtttacattggtgacagggactccagaagaattgtgagagattatgagtggacaacctcc
tccaaaagactcaagttcaatgctgttctcacaacatatgagattcttttacgtgacaaa
gaagacctgagagacagctgtcagtgggcttgcttggtggttgatgaggcgcataggctc
aagaacgaggaatctcagctgtaccaggcactgaaggagttccgctccaaccaccgtttg
ctcatcactggtacacccctccagaactctctcaaggagctgtgggccctcctgcacttc
attatgccggagaagtttgatgactgggactattttgagtcacagcatgacagtgagaac
atgaggaagggcttccaccggctccacaagcagctggaacccttccttctgcgtcgtgtc
aagaaggatgtggagaagtccctccctgcaaaagtggagcagatcctcagggtggacatg
atgcagcaacagaagcagttctacaagtggattctcaccaagaattatgacatgctcaaa
aaagggaacaggggttcaacttcaagttttgtaaatattgtgatggagttgaagaaatgc
tgcaaccacagtcacctcattaaacctcctgaggatactatctcaacagagattctacag
caattattaagaggcagcggcaagttaatgctgctggataagcttttggttaggctgcgg
gagactgggcacagagtcctcatcttctcccagatggtgcgtatgttggacatcctggcg
cagtacctgcagtaccgacgcttccccttccagaggctggatggctccatcaagggtgag
cttaggaggcaggcgctcgaccacttcaatgccgaaggttctcaggatttctgtttcctc
ctgtccacacgtgccggaggtcttggaatcaacctcgcaactgcagataccgttgtcatt
tttgactcggactggaatccccagaatgatctgcaagcgcaagcaagagcacatcgaata
gggcagaaaaatcaagttaatatttatcggctggtgacgaaaaatagtatagaagaaaat
attattgagcgtgcgaaacagaagatggttcttgatcatcttgttattcagtccatggac
acatctggtcgcactgtcttcaataaaaaaatgtcaagctcaaattctaacccattcaac
cgcgaggagttgaatgccatcctaaagtttggtgccgaggaactttttaaagacgacgag
gagaatgaggaggaaccaatgtgtgatattgatgagatcctgaggagagccgagacgagg
gatgaggctccgtccatggctggtgatgagcttctgagcgcgttcaaagtggcttccttt
aatctggatgaagaggaagaagtctccaagctagactccattgcggacgagagcaccaaa
gactgggatgaaattatcccagaggatttccggaccaaagtggaagaggaggagaagcaa
aaagaaatggctgatctctacttgcccccaagaaaacggaagacagtgaatcaggcagga
cagaaggaagatgaatctcctcgaaccaagaagaaacgccaggaatctgagtcaagcaat
gacgatacagatgacgacaaaccaagaaagcgaggtcggcctcgtatgcaccacaaggaa
accattaaaggttttactgatgcagaggtcagaagattcttcaaaagcttcaaaaagttc
agcaatcccttgcgacgtctcgacactattgctcacgatgctgatctcagagagaagccc
atcagcgacctgcgcaaagtgggcgagacaatatacgagaggtgtcaggatgctatgaag
gagcacgagagtcagaaagagaatgaaaagacgcctgaagttaatggccaacctaagcaa
cgcagagaccgtggaccatcgttcaagctctcaggggtggctatcaatgccaaaaccaca
cttgcaaccattgaggaactagcgcccttggaccacgttgtccctcatgcaccagttgag
cgagcgtcgtggaccttgcagatgaagcgggtcaaagatgcccactgggacgtcccctgg
ggcatccaggatgattccaggttactacgtggtatttacgagtatggaatgggatcttgg
gaacaaatcaagggagatccagcccttaacctcgacgacaaaatcctccttgggggtgag
accaagcctcagggtaaacatttagagagcagagcacaatacttacttaaactaatcaag
aaacagatgggtcttggaccagcaaagctcactccacaggctaagatccacaagcctctc
aaactgcgaaagactaaggaaccaaagggcatctccaaggccattattgaaaatgacgac
agctcggacgacgaaaagaacacctcacaattgtcaggagtgagcctcaaaaaggctcct
aaggtgaatgaagagcccaaggaacacaaggaaccgaaggaaagcaagtccaaagcacgg
gacatcaaggaggagaaggaggatggtgagaaggccaaggtcaaggaggagaacgatgcc
aaggacgagaaaccaaagaagaagaaggagaaaaaggagaagaaagataagaaggagaag
gaaaagaagacagacggaccgatgcatatcactgccaacggacagcccattccgcttgat
gacagtaaagaactggataagacgcacccactttgggatgagtgcaaagagaagatgaga
ccaatgaagagagcgctaaagacccttgacaaccccaatgagagcctgacgcaagaagag
caaattcaacagacacggcgctgtctcatccagataggagatcacattgaacgttgttta
gaaaacataaaggatcctgagagtatgaaggaatggaaaagcctgctgtggcagtttgtc
tccaaatttaccgagtatgattccaaaaagttgcacaagctatataaaaagaacaaaaag
attcaagaagagaagaaagaggctgacaaggacaaagaccatgataaggaaaagaaggag
gataaacgagacaagaaacatgataaggagcacgacaaaaagcgtgacaagggaggcagt
gctggagggggcgaaggaggagggagtggagacaagcaccatgacaagaagcgcaaaatg
gaggagagtggtgcacacagtccttcaaagaaaccttataacgggtggggaccgagaggg
cgcgagggggacaagtggagcgatcgggataagagtcgagaccgagaccgcgatagggat
cgctcggatcgggaccgaccccgagaccgcgacagggaccgagaccgcaactatccacgc
aaccaccctggtcctgggagagagtggcacaacagccctgggggaagagacttcaaagag
agccgctatccccaagactacaagcgtgagggtggtggttatcaccgcgatggttacaag
ccccatggatatcacaggcctggtggaggagactggggtaatcgacctcaccatggcaag
catcccaactatggaccgcctagtggcttcggtccagtacactaccctcctcacccttca
gcaccgggcatctatggggctcaccctcagaatatccgcatgccccatggtccacctcag
tatggtgggcaccggccagagtggaaggacaggggtgaccgggctgaccgagcgccacag
caggactggggcaaggagcgatctgaccgggccccccctccctcctattag
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integrated database retrieval system
