Penaeus vannamei (Pacific white shrimp): 113809355
Help
Entry
113809355 CDS
T06111
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvm03009
]
113809355
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113809355
Ribosome biogenesis [BR:
pvm03009
]
Eukaryotic type
Pre-60S particles
Helicases
113809355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
113809355
NCBI-ProteinID:
XP_027216724
LinkDB
All DBs
Position
30:21591248..21595774
Genome browser
AA seq
578 aa
AA seq
DB search
MDTSWASLKVKLIPPIMSTLKDFKFKSMTPVQAACIPMLLSHKDVVAEAVTGSGKTLAFL
IPVLQILERREQKLKKHEIGALVVSPTRELATQIHEVLQGFLKYLPGRTSMLAVGGSYPS
EDIDRFKANGAHILIGTPGRLEDLLGRQISDCGSFADGVRALEVLILDEADRLLDMGFHS
TISTIIAYLPKQRRTGLFSATQTSDVVTLVRAGLRNPVQVKVKEKDATGDERTPKSLMNF
YMECEPDKKFATLLAVLREKRSEKCMVFFPTCACVEYFTIILKETLKNMKILSLHGKMKD
KRFKIFDEFRSLASGVLLCTDVMCRGVDIPRVDWVIQFDPPSSATAFVHRCGRTARIGNE
GNAIVMLLPSETDYVEFIQINQKVTLRRLKPPAEVPDLLPKMRRLQLKDRNVMDKANRAF
VSFIKSYAKHECSLILNVKELNFGHVATSFGLLRMPKMPELKDATVPDFTPVEVDFNAIP
YKDKQREQSRQRKMQEYEQTGEWPGMKPRKRKTEAWSEQKDKKRRKQRKKELKEMRAKNR
FTPEEQDEVNEDFRLLKKLQKGKINSSTFDQHFGLDDD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggatacctcatgggctagcctgaaggtgaagctgatccccccgatcatgagcaccctg
aaggacttcaagttcaagagcatgacgccggtgcaggcggcctgcatcccgatgctgctc
agccacaaggacgtggtcgccgaggccgtcacgggcagcggcaagacgctggccttcctg
atcccggtgctgcagatcctggagaggcgcgagcagaagttgaagaagcacgagatcggc
gccctagtggtgtcgccgacgagggagttggccactcagatccacgaggtgctgcagggc
ttcctcaaatatctccccgggcgcacgtccatgctggcggtgggcggctcgtaccccagc
gaggacatcgaccgcttcaaggcaaacggggcgcacatcctcatcgggacgcccgggaga
ctggaggacctgcttggccgccagataagtgactgcgggagcttcgcggacggcgtgcgc
gccctcgaggtgctcatcctcgacgaggcggacaggctgctggacatgggcttccactcc
accatcagcaccatcattgcctacctgcccaagcagaggaggacgggcctcttttcggcc
acgcagacctcggacgtcgtgactctcgtcagggcaggcctcagaaacccagtgcaggtc
aaagtcaaggaaaaggacgccacgggtgacgaaaggacgcccaaaagtctcatgaatttt
tacatggagtgtgaacctgataagaaattcgcaaccctgctcgcggtcttgagggagaag
aggagtgagaagtgcatggtgttcttccccacgtgtgcgtgcgtggagtactttacgatt
attctgaaggagaccttgaagaacatgaagatcctgtccctgcacggcaagatgaaggac
aagagattcaagatcttcgacgagttccgttccctggcgagcggcgtcctgctgtgcacg
gacgtgatgtgccgcggcgtggacatcccccgcgtggactgggtgatccagttcgacccg
ccgtcgtccgccacggccttcgtgcaccgctgcggccgcaccgccaggatcggcaacgag
ggcaacgccatcgtcatgctgctgccctcggagacggactacgtggagttcatccagatc
aaccagaaggtgacgctgcgccgcctgaagccgcccgccgaggtgcccgacctgctgccc
aagatgcggaggctgcagctcaaggaccgcaacgtcatggacaaggccaaccgcgccttc
gtgtccttcatcaagtcgtatgccaagcacgagtgcagcctcatcctgaacgtgaaggag
ctcaacttcggccacgtggccaccagcttcggcctcctcaggatgcccaagatgcccgag
ctcaaggacgccaccgtgccggacttcacgccggtcgaggtcgacttcaacgcgatcccg
tacaaggacaagcagcgggagcagagccgccagcggaagatgcaggagtacgagcagacg
ggcgagtggccgggcatgaagccgcggaagcgcaagacggaggcgtggtcagagcagaag
gataagaagcgcaggaagcagaggaagaaggagctcaaggagatgagggccaagaaccgg
ttcacgcccgaggagcaggacgaggtgaacgaggacttccgcttgctcaagaagctgcag
aagggcaagatcaacagctcgaccttcgaccagcacttcggcctcgacgatgactga
DBGET
integrated database retrieval system
