Penaeus vannamei (Pacific white shrimp): 113809696
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Entry
113809696 CDS
T06111
Symbol
Cbp80
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03013
Nucleocytoplasmic transport
pvm03015
mRNA surveillance pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113809696 (Cbp80)
09122 Translation
03013 Nucleocytoplasmic transport
113809696 (Cbp80)
03015 mRNA surveillance pathway
113809696 (Cbp80)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113809696 (Cbp80)
03041 Spliceosome [BR:
pvm03041
]
113809696 (Cbp80)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
113809696 (Cbp80)
Spliceosome [BR:
pvm03041
]
Common components
Common spliceosomal components
Cap binding complex
113809696 (Cbp80)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Kazrin
WIT1_2_N
DUF6362
Motif
Other DBs
NCBI-GeneID:
113809696
NCBI-ProteinID:
XP_027217163
LinkDB
All DBs
Position
39:14274073..14290494
Genome browser
AA seq
790 aa
AA seq
DB search
MSRRKFDEMSDYADSGRDRKRRRADAVEIEDRLESLILRVGEKSTSSLESNLEGLASVLE
ADINNYKSKILKILSDCAVKMPEKTTIYTTLVGLLNAKNYNFGGEFVDMMARKLKEALKA
CMWKTARYVLRFFADLVNCHVISTNSLLQLLHTFLDTARDDNSPQVRSDTYVYAVLSCLP
WVGRELYEKKEQDLERLLKHIEIYVRKRSRKHVPGLRVWRSDRPHPQEEYLDCLWAQICK
LRSDMWQEKHIARPYVAFDSILCEALQHNIPPLTLPPHHTDNTYPFPWVVFRLFDYTDCP
EGPVLPGAHSIERYLIEEHLHNIVKDYHLERKQCAAFLLDFPLKHKIPLEYMIVEVVLAE
LFHLPGPRYIEICYGSLLIELCKLQPATMPQVLAQAVELLFDRIDTMNVCCFDRMVNWFS
YHLSNFQFKWSWDDWLEASQLDPAHPRAKFIIEVLQRSMRLSYHQRIAEVVPEQFDCFVP
HKPVAIYKFANDGAGDLPGSNAAHRLESVIRAKGTAMEVVQVLSELPNPLRENDETDPPY
NPLQIQVFVQVLLHLGSKSFSHAFAGISKFLKVFEAVVGGNEEAQMLVLKEMQDVWHHHQ
QMMVMLSDKFLRTQIVTCATVANWVFSKEMMPEFTKNYIWEILHGTIRKMNKHVARLQRE
VNEARERRAGNESEDSSSDEEEQRPRPSEEEIERMEEKLEAAQADQKNLFLIIFQRFIMI
LSEHLVRCDTDGRDFNTHWYRWTIGRLHQIFMMHNSQVERYSQTLSTLLFTQDLDPHILD
SFNQFVALRA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgccgaaagttcgatgagatgtctgattatgcagactccggtcgcgaccggaaa
agacggagggcagatgcggtagaaattgaagaccgactagaatctctaattcttcgtgtg
ggagagaagagtacttcatccttggaaagcaatctcgagggtctagcaagtgttctggag
gcagacattaacaattacaagagcaagattctgaagatcctgagtgactgtgctgtaaag
atgccagaaaagaccaccatctacacaactctggttggacttctgaatgcaaaaaactac
aactttggcggagagtttgttgacatgatggcacggaagctgaaggaagcacttaaagct
tgtatgtggaagacagcacgctatgtactcaggttctttgctgatctggtaaactgtcat
gtgatctctaccaactcactgctgcagctcctccacacctttttagacacagcaagagat
gacaactcaccccaagttcgtagtgacacatatgtatatgctgtactgagctgccttccc
tgggtcgggcgtgaactatatgaaaagaaggaacaggaccttgaacgcttgctgaagcac
attgagatttacgtaaggaagcgtagccgcaagcatgtaccaggactaagggtgtggagg
tctgaccgtccacatccacaagaggagtatttggattgtctttgggctcagatctgcaaa
ctgcgatcagacatgtggcaggaaaagcatatcgcaagaccctatgtggcatttgactcc
attctgtgtgaggcgctgcagcacaacatcccacccctgaccctcccaccacatcacaca
gacaacacctaccccttcccatgggttgtgtttaggctttttgactacactgattgtcca
gagggtcctgttctgccaggtgctcattctatcgagcgataccttattgaggagcacctt
cacaatatcgtcaaggactatcacctagagaggaagcagtgtgcggcattcttgcttgat
tttcccctgaaacacaagatccctcttgaatacatgattgttgaagtggtcttagctgaa
ctcttccacctgcctggaccaagatacattgagatctgctatggctcactcttgattgag
ctctgcaagttacagcctgcaactatgcctcaggtgctggcccaagctgtagaattgctt
tttgaccgcattgacacgatgaatgtctgctgctttgacagaatggtgaattggttttca
tatcatttaagtaacttccagtttaagtggtcctgggatgactggttagaagcgtctcag
ttagacccagctcatcctagggctaaattcataatagaagtactacagcgaagtatgaga
ctctcctatcatcaacgaattgcagaggttgtcccagagcagtttgattgctttgttcca
cacaaaccagtggccatttataaatttgccaatgacggtgcaggagacctcccaggaagc
aatgcagcccatcgccttgagtctgtgatccgtgcaaaggggacggcaatggaggtggta
caggtcctctctgagcttcccaacccactcagagaaaatgatgaaactgacccaccctac
aacccactacagatccaagtgtttgtccaagtactgttgcatttagggtcaaagagtttc
tcacatgcgtttgctggcatttctaagttcttgaaggtctttgaagcagtagtaggagga
aacgaggaagctcaaatgctcgtattgaaagagatgcaagacgtctggcaccaccaccag
cagatgatggtaatgctgagtgacaagttcctccgcacacagattgtcacctgtgccact
gttgccaattgggtcttcagcaaagaaatgatgcctgagttcacaaagaattacatctgg
gagatcctccatggcaccattagaaagatgaacaaacatgtggctcgactgcagcgcgag
gtcaatgaagcacgtgaacgccgggctgggaatgaatcagaggactcgtcttcagacgaa
gaggagcagagacctcggccgagcgaggaggagatagagagaatggaagagaagctggag
gctgcacaagcagatcagaagaacctcttccttattatattccagcgttttatcatgatt
ctctctgaacacttggtgaggtgtgatactgatggacgtgacttcaatacacactggtac
cgctggaccattggtagacttcatcagatattcatgatgcacaacagccaagtggaacga
tacagccagacgctaagcacactgctcttcacacaggatctcgatcctcacattttggat
tcctttaatcagtttgttgcattacgcgcataa
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