Penaeus vannamei (Pacific white shrimp): 113809983
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Entry
113809983 CDS
T06111
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113809983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113809983
03036 Chromosome and associated proteins [BR:
pvm03036
]
113809983
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113809983
Coactivators
SAGA/TFTC/STAGA complex
113809983
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
113809983
STAGA complex
113809983
TFTC complex
113809983
SAGA complex
113809983
SLIK complex
113809983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
EIF3I
TFIID_NTD2
WDR55
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_IP5PC_F
Beta-prop_VPS8
Beta-prop_DCAF12
RMC1_N
eIF2A
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
113809983
NCBI-ProteinID:
XP_027217465
LinkDB
All DBs
Position
2:45405219..45416109
Genome browser
AA seq
653 aa
AA seq
DB search
MRKVRTEKVMAHVSDYLKRRNLESGGPGGSVTLTEQQVGILGLVSPSAPNTFTFSTTSTQ
HTHVDHQYVRLKSWMMEASEPCRSELSQVLFPLFVHLYLELVAATGRQAANKFFKKHYQV
FLVNRDYENTLSQVVSASSINSSGDMNSSPVIQNLKSGKYLVRLSELTLNYFLRYLKSSE
NPTLLQIFNTYIEVEVDESGAGSSGAVFRGPDLNTSTSTTLVNGHTPDSLSSDASAYAAD
GMDCSPEELRKVKDIMARVRSAQPTAPSLCVYTVTNAYNGLSCANVNAEGQLLSCGFEDS
VIKLWKLTPPLHDIGFGKKKTVVGPRGGISHTLLACDDSRIEDSGERDEDDKEEEATATE
LRNGGRRRNRGGELFALRGHSGPVLDTAFSHDSNYLLSVSEDCSMRLWDLNNGNAVALYR
GHSYPVWCVAVAPLTMYVATGSYDTTARLWSTDATYPLRTFSGHTRAVDCVAFHPNGTYL
ATGSCDRSIRLWQVTDGDAARILLHHKSAINTMSFSPNGKYLASGSEDGTVVVWDLAGGR
VMTEISSSNQVNSGNTGSGTPHQDSIMNVCWSTDSSLLVSASSDGCVRTSHLKQTPASND
GTNSWELNEVGQVQCSGSTNGGSGNNGASGVLLHTSLTSHNYLTSVIALDVER
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaagtgaggacagagaaagtgatggctcatgtcagcgactacttgaagaggaga
aatctcgagagtggaggaccaggaggaagtgtaacgctaacagaacaacaggtggggatt
ttgggcctagtttctccctcggcccccaacaccttcaccttctccaccacctccacccag
cacacacatgttgaccaccagtatgtcaggctaaagtcctggatgatggaggccagtgag
ccatgccgttccgaattgtcccaagttctgtttccgcttttcgtccacctgtatcttgag
ctggtggcggccacagggagacaagcggcaaacaagttcttcaagaaacattatcaggtg
ttcttggtgaaccgtgattatgaaaatacactctctcaggttgtaagtgcatcttctata
aattcttctggagacatgaattcttctcctgttatacagaatctcaagagtggcaagtac
ctggtacgtttaagtgaactgactttaaactactttctgcgatatctaaagtcgagtgag
aaccccacattgttgcagatattcaacacgtacattgaggttgaggtggatgagtcaggt
gctggaagttcaggagctgtgttcagagggcctgacttgaacacttctacctcaacaaca
ttagttaatggtcacactccagactcactgtcctctgatgcctctgcttatgcagcggac
ggaatggactgtagtccagaagaattgcgcaaagtgaaagacatcatggctcgcgttcgg
tcagctcaacccactgccccatcattgtgtgtgtatacggttacaaatgcatataatggc
ctgagttgtgctaatgtgaatgcggaaggacagcttttatcctgtgggtttgaagacagt
gtaatcaaattgtggaaattgacaccccctttgcatgatatagggtttggaaagaaaaaa
actgtagttggacccagaggtgggatatcgcacacattacttgcatgtgatgattctcgc
attgaagacagtggtgaaagagatgaggatgacaaagaagaagaagccacagctactgag
ctccgtaatggaggaaggagaagaaatcgtggtggggaactttttgctcttcgtggacac
agtgggcctgtgctggacacagcattcagtcacgattcaaattacttgttatcagttagt
gaagattgctccatgagactttgggacttaaataatggtaatgcagtggctctatataga
ggtcattcctatcctgtttggtgtgtggctgtagcccctctcactatgtatgtggcaaca
ggctcatatgatacaactgcaagattgtggtccacggatgcaacgtacccccttcgcacc
ttttcaggtcacacaagagctgtagattgtgtggcttttcatcccaatggcacttactta
gctactggatcctgtgaccgcagtattagactttggcaagtcactgatggtgatgcagca
cggatccttctgcaccacaagtcagccatcaacactatgtcattttctccaaatggaaag
tacctggcctctggcagcgaagatggcacagttgttgtatgggaccttgctggtggacgc
gtcatgacggaaattagcagtagtaatcaagtcaatagtgggaacactggctcaggtacg
ccccaccaagattcaatcatgaatgtgtgttggtctactgattcatccctccttgtgtct
gcatccagtgacggctgtgtgcggacaagtcatctaaagcaaaccccagcaagcaatgat
ggaaccaattcctgggaactgaatgaagttggccaggtccagtgcagtggaagtacaaat
ggaggaagcggcaataatggagcgtcaggagtcctgctccacacgtctctaacgtctcac
aattacctcacttctgtcattgctcttgatgtggagagatag
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