KEGG   Penaeus vannamei (Pacific white shrimp): 113809983
Entry
113809983         CDS       T06111                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
pvm  Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pvm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    113809983
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvm03021]
    113809983
   03036 Chromosome and associated proteins [BR:pvm03036]
    113809983
Transcription machinery [BR:pvm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     113809983
   Coactivators
    SAGA/TFTC/STAGA complex
     113809983
Chromosome and associated proteins [BR:pvm03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     113809983
    STAGA complex
     113809983
    TFTC complex
     113809983
    SAGA complex
     113809983
    SLIK complex
     113809983
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I TFIID_NTD2 WDR55 NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd CFAP251_N DSE1_N Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_Nup120_160 PAC11 ASA1 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N WD40_RFWD3 Beta-prop_DCAF4 WD_LRWD1 Beta-prop_IP5PC_F Beta-prop_DCAF12 Tricorn_2nd TRM82_WD RMC1_N eIF2A Beta-prop_ACSF4 DNAI3_WD SHKBP1_KCTD3_C Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 113809983
NCBI-ProteinID: XP_027217465
LinkDB
Position
2:45405219..45416109
AA seq 653 aa
MRKVRTEKVMAHVSDYLKRRNLESGGPGGSVTLTEQQVGILGLVSPSAPNTFTFSTTSTQ
HTHVDHQYVRLKSWMMEASEPCRSELSQVLFPLFVHLYLELVAATGRQAANKFFKKHYQV
FLVNRDYENTLSQVVSASSINSSGDMNSSPVIQNLKSGKYLVRLSELTLNYFLRYLKSSE
NPTLLQIFNTYIEVEVDESGAGSSGAVFRGPDLNTSTSTTLVNGHTPDSLSSDASAYAAD
GMDCSPEELRKVKDIMARVRSAQPTAPSLCVYTVTNAYNGLSCANVNAEGQLLSCGFEDS
VIKLWKLTPPLHDIGFGKKKTVVGPRGGISHTLLACDDSRIEDSGERDEDDKEEEATATE
LRNGGRRRNRGGELFALRGHSGPVLDTAFSHDSNYLLSVSEDCSMRLWDLNNGNAVALYR
GHSYPVWCVAVAPLTMYVATGSYDTTARLWSTDATYPLRTFSGHTRAVDCVAFHPNGTYL
ATGSCDRSIRLWQVTDGDAARILLHHKSAINTMSFSPNGKYLASGSEDGTVVVWDLAGGR
VMTEISSSNQVNSGNTGSGTPHQDSIMNVCWSTDSSLLVSASSDGCVRTSHLKQTPASND
GTNSWELNEVGQVQCSGSTNGGSGNNGASGVLLHTSLTSHNYLTSVIALDVER
NT seq 1962 nt   +upstreamnt  +downstreamnt
atgaggaaagtgaggacagagaaagtgatggctcatgtcagcgactacttgaagaggaga
aatctcgagagtggaggaccaggaggaagtgtaacgctaacagaacaacaggtggggatt
ttgggcctagtttctccctcggcccccaacaccttcaccttctccaccacctccacccag
cacacacatgttgaccaccagtatgtcaggctaaagtcctggatgatggaggccagtgag
ccatgccgttccgaattgtcccaagttctgtttccgcttttcgtccacctgtatcttgag
ctggtggcggccacagggagacaagcggcaaacaagttcttcaagaaacattatcaggtg
ttcttggtgaaccgtgattatgaaaatacactctctcaggttgtaagtgcatcttctata
aattcttctggagacatgaattcttctcctgttatacagaatctcaagagtggcaagtac
ctggtacgtttaagtgaactgactttaaactactttctgcgatatctaaagtcgagtgag
aaccccacattgttgcagatattcaacacgtacattgaggttgaggtggatgagtcaggt
gctggaagttcaggagctgtgttcagagggcctgacttgaacacttctacctcaacaaca
ttagttaatggtcacactccagactcactgtcctctgatgcctctgcttatgcagcggac
ggaatggactgtagtccagaagaattgcgcaaagtgaaagacatcatggctcgcgttcgg
tcagctcaacccactgccccatcattgtgtgtgtatacggttacaaatgcatataatggc
ctgagttgtgctaatgtgaatgcggaaggacagcttttatcctgtgggtttgaagacagt
gtaatcaaattgtggaaattgacaccccctttgcatgatatagggtttggaaagaaaaaa
actgtagttggacccagaggtgggatatcgcacacattacttgcatgtgatgattctcgc
attgaagacagtggtgaaagagatgaggatgacaaagaagaagaagccacagctactgag
ctccgtaatggaggaaggagaagaaatcgtggtggggaactttttgctcttcgtggacac
agtgggcctgtgctggacacagcattcagtcacgattcaaattacttgttatcagttagt
gaagattgctccatgagactttgggacttaaataatggtaatgcagtggctctatataga
ggtcattcctatcctgtttggtgtgtggctgtagcccctctcactatgtatgtggcaaca
ggctcatatgatacaactgcaagattgtggtccacggatgcaacgtacccccttcgcacc
ttttcaggtcacacaagagctgtagattgtgtggcttttcatcccaatggcacttactta
gctactggatcctgtgaccgcagtattagactttggcaagtcactgatggtgatgcagca
cggatccttctgcaccacaagtcagccatcaacactatgtcattttctccaaatggaaag
tacctggcctctggcagcgaagatggcacagttgttgtatgggaccttgctggtggacgc
gtcatgacggaaattagcagtagtaatcaagtcaatagtgggaacactggctcaggtacg
ccccaccaagattcaatcatgaatgtgtgttggtctactgattcatccctccttgtgtct
gcatccagtgacggctgtgtgcggacaagtcatctaaagcaaaccccagcaagcaatgat
ggaaccaattcctgggaactgaatgaagttggccaggtccagtgcagtggaagtacaaat
ggaggaagcggcaataatggagcgtcaggagtcctgctccacacgtctctaacgtctcac
aattacctcacttctgtcattgctcttgatgtggagagatag

DBGET integrated database retrieval system