Penaeus vannamei (Pacific white shrimp): 113810739
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Entry
113810739 CDS
T06111
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113810739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113810739
03036 Chromosome and associated proteins [BR:
pvm03036
]
113810739
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113810739
Coactivators
SAGA/TFTC/STAGA complex
113810739
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
113810739
STAGA complex
113810739
TFTC complex
113810739
SAGA complex
113810739
SLIK complex
113810739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Tricorn_2nd
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_HPS5
WD40_RFWD3
WD_LRWD1
RMC1_N
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
LisH
WDR54
Motif
Other DBs
NCBI-GeneID:
113810739
NCBI-ProteinID:
XP_027218189
LinkDB
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Position
18:complement(35476152..35488612)
Genome browser
AA seq
747 aa
AA seq
DB search
MSDAAGPTYASLTPANPTIINGLAGVDLQTGQQLTTHQGVMNHSDPTVVNSVNVVNTVGV
AGTGAVQTVASPIMATVIPPNSGSPAQANGNATATAGESSVSLDRNSLVAVLNFLKKNQF
KATEDLLRQETNFYDTVSDSEGGIGGDSEVTSVLSAYKSEGDPAEYEDAYKSLQNFIEKS
LDAYKHEVALVLFPVFVHMYLELVYNGHEEVAKSFMEKFGNTQEDYFEEDMHKLSLVTSR
DHMTGYQIMDNFRSNQFTVRMSRDTYAHLKRYLTERGGGPVARIIHDRLYLDVYEGVPRT
RAQVGATAGAQEGEAPKQVNKTKIYYGLLKEPELPNLAMEEEEGEEEGDKPKKKKPKKDA
LQKSKKNDPNAPPTYRIPLPELRDIDRIEKAKAFRDTVKRVTLNRETLPSICFYTFLNAT
GNITGVDISDDSSLLAYGTADSQVRVQSITPSKLRCMKSAEQLNDIDKDADDVLVRMMDE
RTADYVRTLLGHSGPVYACSFSPDRNLLLTAGEDGTIRLWSLQTWTCLVVYKGHVFAVWD
VRFSPYGYYFASGGHDRTGRLWATDHHQPLRIFAGHFSDVDVVQFHPNSNYVASGSSDRS
IRLWDVLNGNCVRVLTGHKDVIDALAFSPCGRFLASGGGDKRVLVWDLANGHLIAEMLSH
TSTIYTISFSRDCNMLASGGLDNCVKLWDFTRVLEDNHEEDVSVSHNPEVKRSESLLLGT
FPTKNTPVLATHFTRRNVLLAAGPFEG
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgcggcgggccccacttacgctagtttgacacccgctaacccgaccataatc
aacgggttggctggtgtcgacttgcagacgggtcaacagctcaccacacaccaaggcgtc
atgaatcacagcgacccgacggtggtgaactcggtgaatgtggtgaacacagtcggggta
gcagggactggcgccgttcaaactgtggcatcaccaattatggctacggttattcctcca
aattcagggagtccagctcaggcgaatggtaatgcgacagcgacagcgggagaatcttcg
gtttccttagatagaaattctctcgtcgcggtcttaaactttttgaagaaaaatcagttc
aaggcaacagaagatttgctaagacaggaaaccaatttttatgacactgtatctgacagt
gaaggtggcattgggggtgattcagaggtcacaagtgtcttgtctgcttataagagtgag
ggagacccagctgaatatgaggatgcttacaaaagtctacaaaactttattgagaagagt
ctggatgcatacaagcacgaagtggctttggtgctgttcccagtattcgtccacatgtat
ctagaattagtatacaatggtcatgaggaagttgcaaaatcattcatggagaaatttggt
aacactcaggaagattactttgaggaagatatgcacaaactctctcttgttacatcgagg
gatcacatgacaggataccaaatcatggataactttcgatcaaaccagtttacagtgaga
atgtcaagagatacctatgctcacttgaagcggtacctaacagagcgtggaggaggacct
gttgcaagaatcatacatgacagactgtacctagatgtttatgaaggagttcctcggaca
agagcacaggttggagcaacagcaggagctcaggaaggagaagcacctaaacaggtcaac
aagaccaaaatctattatggacttctgaaagagccagagctgccaaacttagcaatggag
gaagaagaaggtgaagaagaaggagataagccaaaaaaaaagaagccaaagaaagatgcc
cttcagaagagcaaaaaaaatgatccaaatgcaccacctacctacagaatacccttgcca
gaactgcgggatattgatcgaatcgaaaaagccaaagcattcagagatacagtaaagaga
gtcacactaaacagagagactctaccttctatatgcttctatacatttttgaatgctaca
ggaaacataacaggagttgatatatcagatgattcaagtttgctagcatatggtacagct
gattctcaagttcgtgtacaaagcatcacaccaagcaaattacgatgtatgaagtctgca
gaacaattgaacgacattgacaaagatgctgatgacgtcttggtacgtatgatggatgaa
agaactgcagattatgtccgtactcttcttgggcattcgggcccagtttatgcctgctcc
tttagtccagaccgcaacctcttgctgacagcaggagaggatggtactattcgcttatgg
agcttgcagacttggacctgtcttgttgtgtacaaaggccatgtttttgctgtatgggat
gtgagattttctccgtatggatactactttgcatcaggtggtcatgatcggactggccgt
ttatgggcaacagaccatcatcagccattaagaatttttgcagggcatttttcagatgtt
gatgttgttcagttccacccaaacagcaattatgttgcttctggttctagcgatcgcagc
atcagactatgggacgtcctcaatggaaattgtgttcgtgttctaacaggccacaaggat
gtcattgatgcattagcattttcaccatgtgggaggtttctggcttctggtggtggcgac
aagcgtgttttagtatgggatctggcaaatgggcatcttattgctgaaatgttatctcat
acatcaacaatctacacaatttctttctcaagagattgtaatatgcttgcttcaggtgga
ctggacaactgcgtaaagctgtgggacttcacacgtgttctagaagacaatcacgaggag
gatgtcagtgtatctcacaatcctgaagttaaacggagtgaatccttgctcttgggaaca
ttcccaacgaaaaatacaccagtgcttgcaacacactttaccagaagaaatgttttgttg
gctgctggaccatttgagggatga
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integrated database retrieval system
