Penaeus vannamei (Pacific white shrimp): 113810934
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Entry
113810934 CDS
T06111
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113810934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113810934
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113810934
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113810934
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
113810934
NCBI-ProteinID:
XP_027218389
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All DBs
Position
6:12230722..12247623
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AA seq
440 aa
AA seq
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MALTFVDLGDSVKCIMGSLGGTVARSIESRGIASGPSVGSLVSSGSGSSGGSSLAALSSA
VAATQNTNSLFMANSIQTATQQRAVTDMLRHMQGLGNRSITGIVGRPYGSGGNSMMGLHS
NFGGDSAPPPLDLSEFPSLSSRSTDNSQPNPMAGRQPYVGMVKQPTPETSEFTMSSEDFP
ALPGTQSTPTGKIFSPFSDDGGFSNNDKKSTSTASSESSSDFSLRVAEKRESMRRGIQTR
ADGKVTNIPGDMVTDQFGMVGLLTFIRAAETDHQLVSLALGSDLTTLGLNLNSPENLYPN
FGGPWAETPCRPQDIDYHVPQEYLTNQQIRGKLAPVKFDRYGEDLLFYMFYSNAGDVLQI
LAGSELYNRDWRYHKDERVWITRAPGMAPVEKGPNFERGTYFYFDAQNWRKVPKEFHLEY
DKLEERPHIPGGITSTSSTL
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcattgacgtttgttgatctcggagattctgtcaagtgtattatggggagtttaggc
ggcactgttgccagaagcattgagagtcgtggtattgcaagcggtccgagcgtcggaagt
cttgtcagcagtggcagtggtagctcaggaggttccagcctggcagccctgtcctcagct
gtggcagcaacacaaaatacaaattctctctttatggcaaacagtattcagactgcaaca
cagcagcgagcagtcaccgatatgcttagacatatgcagggtctaggaaaccgtagtata
acaggaattgtggggagaccctatggaagtggcggcaatagtatgatgggtctccacagt
aattttggtggggactcggccccacctccattggacctgtcagaattcccttccttatct
tcccgaagtaccgataactcccagcctaaccctatggctggaagacaaccttatgtggga
atggtgaagcagccgacgcccgaaacctctgaattcactatgagtagtgaggacttccca
gcattgccaggtactcaatctactccaactgggaaaatcttctcaccgttttcagatgac
ggggggttctcaaacaatgataaaaagtctacctcgacggcaagttcagagtcatcatcg
gacttctccctacgggtagcagagaagagagaatctatgaggagaggaattcaaactcgt
gccgacggtaaagtaacaaacatacctggagacatggtgacggaccagttcgggatggtg
ggtcttttaacgtttatcagagcagcggaaacggaccaccaactcgtatcattggcatta
gggtcagacttaaccaccttagggttaaatctgaattcccctgaaaatctctaccctaat
ttcggtggcccttgggcagaaaccccctgccgtcctcaggatatagattatcatgttccg
caagaatacttaactaatcagcaaatcagagggaagttagcgcctgtaaagtttgacaga
tatggagaggacttgctcttctacatgttttactccaatgcaggagatgtactacaaata
ttggctggttcagagctgtacaaccgggactggagatatcacaaagatgaacgagtatgg
ataaccagagccccaggcatggcaccagtggaaaagggtcctaactttgaacgtggaact
tacttctattttgatgcccagaattggaggaaagtgccaaaggaattccatcttgagtac
gacaagttggaagagcgcccacacatccctggtggtatcacatcgacttcatctaccctg
tga
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