Penaeus vannamei (Pacific white shrimp): 113811255
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Entry
113811255 CDS
T06111
Symbol
PAN3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113811255 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113811255 (PAN3)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113811255 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
113811255 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
RecO_N_2
IFR3_antag
Motif
Other DBs
NCBI-GeneID:
113811255
NCBI-ProteinID:
XP_027218757
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Position
24:complement(23497300..23538724)
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AA seq
698 aa
AA seq
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MDPLFLNLSLPQQAVAATSTPPVANQVNGLPQESKLATYISNRHQLPATSQPQQQQQEHS
LTKSIAALSLDGVGTRKISVPSVSSIAEFVPGSGGSAGLAHSASTPSFHSFTGLGSPSTP
SSLSFTPMTGTSPAATVASPQRPVSPQGSPNRGRHSPLVGGGDDTSNASSLSTYQENVGG
TTYFFTAQDQQSFTAGAAPSPAPFTAGPPPLVFPPYHILPPTPAHIHHLRAPSNTPHFFM
GDELRHDLLERHALALAHVDPENFPDLPQEVDMYHELVPLEPQPAINKSSMFGYATSVYK
ATNIKTGLHYCLYRIHGYRLSNVKVTQLVDLWKKIQHSSVTQLREVFTTKAFNDNSIVFV
YDYHAGAETLAARHFSSPAALSASGWEGLVNSHGATSGNSPHDPSSRSLHKSHRHNSGNS
LLPEATLWNYIIQLTGALRTIHTQGLACRTLDPSKILLTDNKSRIRVNCCGILDVLNFDP
NAANPLANMPQYQQEDLVNLGKLMVALACNSVLALQRDNIQAALELINRSYSRDLAMLVV
CLLTSQRIKSINDVMPMIGARFYTALESATQRADVYESELSKEIHNGRLFRLLTKLNTIV
DRPELNMDTAWCETGDRYMLKLFRDYVFHQVTDDGRPWLDLGHVVTVLNKLDAGSPDKIC
LMSHDEQNILVTSYAELKRCFERSFAELLQAASSHKAT
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaccctctcttcctcaatctgagcctgccacagcaggccgttgctgccacttccaca
cctccagttgcaaatcaggttaatggccttccacaggagtcaaaactcgccacatatatt
agtaatcgacaccagctgccagccacatcacaaccacagcagcagcaacaggagcattcc
cttaccaagagcattgctgctcttagcctggatggggttggaacgaggaaaatcagtgtg
ccatcagtgagtagtatagcagagtttgtgcctgggtcaggtggaagtgctggcctggcc
cactctgcctccacgccctccttccattcgttcactggcctcggctccccctccacacca
tcctcgctgagcttcacccctatgaccggcacttccccagccgccacagtggcatctccc
caaaggcctgtttctccccaagggtctcctaacaggggacggcactcccctcttgtgggg
ggtggagacgacacaagcaatgcttccagtttgtccacctaccaagagaatgtagggggc
accacctacttcttcactgcccaggaccagcagtcattcacagctggggcagcaccttca
cctgccccatttacagctggtccacctcccctggtgttcccaccttatcacattttaccg
cccacacctgcccatatccaccacttgcgtgcacccagcaacacaccgcatttctttatg
ggggacgagttgcggcatgacctgttggagagacatgctctggctctggctcatgttgac
ccagagaattttcctgatttaccacaagaggttgacatgtaccatgagttggtacccctt
gaacctcagcctgcgataaacaaatcatctatgtttggatatgctacctccgtttacaag
gcgaccaatatcaagacagggcttcattactgcctttatcgtattcatggctatcggctg
agtaacgtgaaggtcacccagctggtggatctgtggaaaaaaattcaacattccagtgta
actcagttgcgagaagtgttcaccacgaaggcctttaatgataactcaattgtgtttgtc
tatgactatcatgccggagcagagaccttggctgcacgtcacttctcctcaccagcagca
ctgagtgccagtgggtgggaggggctggtcaactcacatggggcgacaagcgggaacagt
cctcatgacccatcgtccaggagcttacacaagagccatcgccacaattccgggaacagt
ctgttgccagaggcgaccctctggaactacattatccaactcactggggcattgaggacc
atccacactcagggtctcgcttgtcgcacactagacccatccaaaattctccttacagac
aacaagtcaagaatcagggtgaactgctgcgggattcttgacgtgttaaactttgatccg
aatgctgccaaccccctggccaacatgcctcagtatcagcaagaggatttagtgaacctt
gggaagctaatggtggcactggcatgcaattccgttctggctctgcagcgagacaacatc
caggcagctctggaactcatcaacagatcatactcacgggatttggctatgttggtagtt
tgtttgctcacctctcagcgcatcaaaagcattaatgatgttatgccaatgattggtgca
aggttctacactgctttagagagtgccacgcagagagctgatgtttatgagagtgagctg
tccaaagaaatacacaatggtagacttttccgtctcttgacaaagttgaataccattgtt
gatcgaccagaactcaatatggacacagcctggtgtgagacaggagatagatatatgctg
aaactcttccgtgattatgtattccatcaggtaactgatgatggaagaccgtggttggac
ttgggacatgtggtgactgttctgaataaattagatgcaggatctcctgataagatttgt
ttgatgtctcatgatgagcaaaacatcctggtgacctcctatgcagaactaaaaaggtgc
ttcgaacgctcctttgctgagctgctgcaggcagcatcttcacataaggcaacataa
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