Penaeus vannamei (Pacific white shrimp): 113812022
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Entry
113812022 CDS
T06111
Name
(RefSeq) DNA repair and recombination protein RAD54B isoform X1
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113812022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113812022
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113812022
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DUF6482
Motif
Other DBs
NCBI-GeneID:
113812022
NCBI-ProteinID:
XP_069996853
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Position
27:complement(6073010..6106578)
Genome browser
AA seq
941 aa
AA seq
DB search
MNPSIANTVRMRRSAAPSQLLKRAQFRPPFASQPPAKRPCLERPHSAQERQSESQETEAP
PQSASKQPLRTTADILSLLKKPQNTQCDNQNNKPSNLPSGAIAVKYPLSETKRYRAPGLS
SSFKSVGLKPGGGQGSRAGSLAQGGIENEQPQETRYFSVVWCKLSRKKHKNWEGDAVLIV
KGRSVILKDTEGKEIGRASGYKLADLGTLEEGNTLPIGGKEIEIQGVISAESYATGQCFM
AGASQTTTVPASPVVAPRPKPKPFRLPTLGHGPSRAGGPQRECTSLFDPTKPSALVMPRP
PPQHQWKHNCASAPVVDVVVDPYISGNLRPHQQNGIIFLYECVMGYRLNDNYGAILADEM
GLGKTLQCITLIWTLLKQGPYGGMPVVRRALIVTPSSLTNNWGKEFKKWLGKERIQPYIV
DQNHKAEDFIKQQHSAVMIISYEMFMRCAEVIDSYNFDILFCDEGHRLKNANIKTTSLLC
SLSTRKRIILTGTPIQNDLQELYALVDFVNPGVLGTSASFRRIYEEPINAYQQPMATDSE
KELGETRAAQLNRTTSLFILRRTQEIINRYLPPKVEYVVFCQPSETQLMLYDEIVGCKTL
RQCLNSNDVGDHLSAIMALRKLCNHPALLAQDNEQHSHKEMAMELASLLPEHIKYNQFDE
ADSGKLAVVSCMLWSLAEAGDEKIVLVSNYTSTLDMLANLCERYNYQYLRLDGSVPTGKR
QELVDRFNNKYSKDFVFLLSAKAGGVGLNLIGASRILLYDIDWNPATDLQAMARVWRDGQ
QKKVYIYRLLMTGSLDEKMYQRQVRKQGLSGAVVDARDSERVHFSTKELKDLFTLHSNTV
CLTHDMLQCSCDLTGQTIAVPNTEENTEPERSCQLGDHGQSRSSSNTTMDQLQKWYHSAA
PFSPEIIRDPCVEAANDFITFLFHSVSDSSVKGRFAVQTEA
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagtatagcaaacaccgtaaggatgagacgatctgcagctccatcacagctg
ctgaaaagagcacagttcagacctccatttgccagtcagccaccagccaaacgaccttgt
cttgaaaggccacattcagctcaggaaagacaatcagaatctcaggaaaccgaagcccca
ccacagtctgcctctaaacaaccccttcgaactacagcagatattctatccttgttgaag
aagccacagaatacccaatgtgataatcagaataataaacctagtaacttgccatcaggt
gccattgccgtaaagtaccccttaagtgaaacaaaaaggtacagagccccaggtttatcc
tcatcattcaagtctgttggcctgaaaccagggggagggcaaggatccagggctggaagt
ttggcccaaggaggcatagaaaatgagcagccacaggagacaaggtatttctctgttgtg
tggtgcaagctgtcacgcaagaaacacaagaactgggaaggggatgcagtgcttatagtg
aaaggaagatcagttattcttaaggatactgaaggaaaggagattggtcgtgcatctgga
tacaagttggcagatttgggaacattagaagagggaaacactcttccaattggaggcaag
gaaatcgagattcaaggtgtgattagtgctgagagctatgctactggacagtgctttatg
gcaggagccagccaaaccacaacagttcctgcttcaccagtcgttgctccacggcccaaa
cctaaaccatttcgccttcccacccttggacatggccccagtcgagctggtggaccacaa
agggagtgcactagtctctttgatccaacaaagcccagtgcacttgtcatgccaagacct
ccaccacaacatcagtggaagcataactgtgctagtgctcctgtggtggatgttgtggtt
gatccctacattagtggaaatttgcgaccccatcagcagaatggaattatcttcctatat
gaatgtgtcatgggatacagattgaatgataactatggagcaattttggctgatgaaatg
ggccttggcaagactctacagtgtattaccttgatatggacacttctaaagcagggtccc
tatggaggaatgccagtagtgaggagggctctgattgtaacgccttcaagtctaactaat
aactggggcaaagagtttaaaaagtggcttggaaaggaaagaatacagccatacattgtt
gatcagaatcataaggcagaggatttcatcaaacaacaacactcagctgtgatgattata
tcatacgaaatgtttatgagatgtgctgaagtaattgacagttataattttgacattttg
ttctgtgatgagggacacaggcttaagaatgccaatatcaagacaacttcactactctgt
agtttgagcaccagaaaaaggatcattctaacaggaactcccattcagaatgatttacag
gaactatatgccttagtagactttgtgaacccaggagtccttggtacatctgcctctttt
agaagaatatatgaagaacctataaatgcataccagcaaccaatggcaacagatagtgag
aaggaattaggagaaacacgagcagcacagcttaataggactacatcactcttcatcctc
agacgtacacaagaaattattaacaggtatctgccacctaaggttgagtacgtagtgttc
tgccagccctctgaaacacagttgatgctttatgatgaaattgttgggtgcaagactctt
cgacagtgtttgaatagtaatgatgtaggagatcatctgtcagccattatggctcttcgt
aaactttgtaaccatcctgcacttttggcacaagataatgaacaacattcacacaaagaa
atggcaatggaattagctagtttgcttcctgaacacataaaatataaccaatttgatgag
gctgatagtggaaaattggctgtagtgtcatgcatgttatggtcacttgctgaagctggt
gatgagaaaattgttcttgtatccaactacacatcaaccttagatatgctggctaattta
tgtgagcgctacaactatcaatacttgagactcgatggttcagtcccaacagggaagagg
caagaattggtggacagattcaacaataagtattccaaagactttgtctttctcttaagt
gcaaaggctggaggagttggtctaaaccttataggagcctcaaggatccttctctatgac
atagactggaatcctgcaacagaccttcaagccatggcacgtgtgtggagagatggccag
cagaaaaaagtatatatttacaggttgttaatgacaggatctttagatgagaaaatgtat
cagagacaagttagaaagcaaggactgagtggagctgtagttgatgctcgcgactcagag
cgagttcacttctccactaaagaactcaaggacttgttcacacttcattcaaacactgtc
tgcctaacacatgatatgctacagtgctcatgtgatcttacaggccagactattgcagtg
ccaaacactgaagaaaacactgaaccagagagatcttgtcaacttggagaccatggccag
tccagatccagttctaacactacaatggaccagttacagaagtggtatcatagtgctgca
cctttctccccagagattataagggatccttgtgtagaggctgccaatgacttcataact
ttcctctttcatagtgtgtctgacagctcagtgaaggggaggtttgctgttcagactgaa
gcttga
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