Penaeus vannamei (Pacific white shrimp): 113812220
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Entry
113812220 CDS
T06111
Symbol
atms
Name
(RefSeq) RNA polymerase II-associated factor 1 homolog
KO
K15174
RNA polymerase II-associated factor 1
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113812220 (atms)
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
113812220 (atms)
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Gene cluster
GFIT
Motif
Pfam:
Paf1
SPT6_acidic
Motif
Other DBs
NCBI-GeneID:
113812220
NCBI-ProteinID:
XP_027219878
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Position
31:6686497..6695234
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AA seq
587 aa
AA seq
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MPPTVNQNHSVDRDKRPRTGERRSDLVSRVKYCNTLPDIPFDPKFINYPFDSNRYVRYKQ
TSLEKNYRYEVLTEHDLGVTIDLINPEAYTPQSNAQLHPTDERLLEDDILTPQDAKRSRH
HHVNVSWLRRTEYISTEPTRFQPQTMEKIEATVGFAARRRKATDENVYTDRESQLRAIEK
TFLEVKEPLKHHYSKPGVTAVEELPVFPDFSLWKYPCAQVIFDSDPAPVGRPMPAQLEEM
SQAMIRGVMDESGEQFVAYFLPTDETLKKRKRDAEENVDYMDEDEYDYLMAREYNWNVKN
KASKGYEENYFFVLRDDGVYYNELETRVRLSKRRLKQGQQPNNSRLVVRHRPLIAQEHKT
QRFRERMLEPPGEDEEEEEEEEEEEEEMEVEENDKGSAKGSDDEGSDRSRSGTPMMDKDE
QGSRSGSRSRSRSGSRSRSQSRSSSRSKSRSKSRSKSRSQSRSRSRSGSRSKSRSRSRSK
SKSRSRSRSASGSRGSRGSRSRSRSKSKTRSPSRSPSRSPSASPARSERSAKSAASSRSA
KSNKRSPSRSPSQRGSPARSRASGSGSGSDSGSDSDSSGSGSGSDSD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgaccgtcaaccaaaaccacagtgtggacagagataaacgaccgagaactgga
gaaagaagatctgacctagtgagtagggtgaagtactgcaacacattgccagatattcca
tttgatccaaaattcatcaattacccatttgattctaataggtatgtgcggtataaacaa
acctccttagagaagaattatcgctatgaagttctcactgagcacgatcttggagttaca
attgacctgattaacccagaagcttacacgcctcagtccaatgcacaactgcatcccaca
gatgagaggttgctggaagatgacattctcactccacaggatgctaaacgttctcgccat
caccatgtcaatgtgtcatggttgcgaaggacagagtacatctccactgagccaacaaga
ttccagcctcagacaatggagaaaattgaagctacagtcggttttgcagctcgcaggaga
aaggctactgatgagaatgtatacactgacagagagagtcagctgagagcaattgagaag
accttccttgaagttaaagagcctctcaagcaccactacagcaagccaggggtcacagct
gtggaagaattaccagtattcccagatttcagcctttggaagtacccatgtgcccaggtc
attttcgactctgaccctgctcctgtgggtagaccaatgccagcccagcttgaggaaatg
tcacaagcaatgattaggggtgtgatggatgaatcaggagaacagtttgtggcctacttc
ctgccaactgatgagaccctaaagaagagaaaacgagatgctgaagaaaatgttgactac
atggatgaagatgagtatgactacctgatggcaagagagtacaactggaacgttaagaac
aaggcctcaaagggctacgaagagaattacttctttgtacttcgtgatgatggggtttac
tacaatgagcttgaaacaagagtgcgattgagcaaacgtcgactgaagcaaggtcagcag
cctaacaactctaggcttgtggtgcgtcatcgtcctctcattgcgcaggaacacaagaca
cagcggtttagggaacgaatgctggaaccacctggtgaagatgaggaagaagaagaagag
gaagaggaagaggaggaagagatggaggtggaagagaatgataaaggtagtgccaagggg
tctgatgatgagggcagtgatcgctcaaggtcaggcactccaatgatggataaggatgag
caagggagtcgatcgggctcacgctcgaggagccggtcaggttcacgttcacgaagccag
tcaagaagcagttccagaagcaagtcacgcagcaaatctcgcagcaagtccagaagtcag
tcacgcagcagatcccgcagtggttcaagaagcaagtcaagaagtaggtcaaggagcaag
tcaaagtcaaggtctcgctctcgctctgcctcagggtccagaggatccagaggatccagg
tctcgctctcgctccaagtccaaaactcgctccccatcccgctcaccttcaaggtcccca
agtgcatcccctgcaaggtctgaaagatctgcgaagtcagctgcatcgagcagatcggcc
aaatcaaacaagcggagtccaagccgatccccatcacagcgaggctctccggcacgcagt
agggcttcaggatcagggtcaggctctgactcaggctctgattcagactcctcaggctct
ggttcaggctcagactcagactag
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