Penaeus vannamei (Pacific white shrimp): 113812398
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Entry
113812398 CDS
T06111
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113812398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113812398
03009 Ribosome biogenesis [BR:
pvm03009
]
113812398
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113812398
Spliceosome [BR:
pvm03041
]
Complex A
U2 snRNP components
U2 related factors
113812398
Complex B
113812398
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113812398
Ribosome biogenesis [BR:
pvm03009
]
Eukaryotic type
90S particles
Helicases
113812398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
Flavi_DEAD
ResIII
nSTAND3
AAA_30
ATPase
AAA_25
ABC_tran
NACHT
Motif
Other DBs
NCBI-GeneID:
113812398
NCBI-ProteinID:
XP_027220070
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MSKRKIDIDPSSLKKRYQGDYEKDSDRDSGYHSHGNASANSGYGHQHRGAVAMSLNPFTN
LPYTPRYYELYRKRIGLPVWEYRNRFFELLGRHQTIVLVGETGSGKTTQMPQWCVEFARS
KGKKGVACTQPRRVAAMSVAQRVAEELDVALGQEVGYSIRFEDCSSSKTVLKYMTDGMLL
REAMSDPMLENYQVILLDEAHERTLATDILMGVLKEVLKQRSDLKLVVMSATLDAGKFQH
YFDKAPLLNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHICEEIAGDVLLFLTGQEEI
EEACKRIKREVDALGPDVGELKCIPLYSTLPPNLQQRIFEAPPPNKPNGAIGRKVVVSTN
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF
RLYTEKAFKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALEL
LNYLAALNDDGNLTELGAIMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVR
PNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDVQWCYDNFVNYRSLKSADNVRQ
QLSRIMDRFSLKRTSTDFNSRDYYINIRKALVSGFFMQIAHLERTGHYMTIKDNQVVQLH
PSTCLDHKPMVYNEFVLTTKNYIRTVTDIKPEWLIKVSPNYYDMQNFPQCEARRQLESIV
ARLESRQYREGF
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgaaaaatagacattgatccatcgtcgctcaaaaagagatatcaaggagat
tatgaaaaggattcagacagagacagtggctaccacagccatggaaacgcaagtgctaat
tccggctatggccatcagcacagaggagctgttgctatgtcccttaatccttttacgaat
ctaccatatacaccaagatattatgaattatataggaaaagaattggcttgccggtatgg
gaataccgtaatagattctttgagttgttgggccgtcatcagactattgtattagttgga
gagactggatctggcaaaactacacagatgccccagtggtgtgtagagtttgctcgttcg
aaaggaaagaaaggagttgcgtgtacccaacctaggagagtagcagccatgtcagtagct
caacgtgtagcagaggaattagatgtagctctcggacaggaagttggttattccatccgt
tttgaagattgttcatcatcaaagactgttctcaagtacatgactgatggtatgttactt
agagaagctatgagtgatccgatgcttgaaaattaccaggtgatcttgctcgatgaagct
catgaacgtacactggcaacagatatcctcatgggtgttttgaaggaggtccttaagcaa
cgaagtgacttgaagctagttgttatgtctgccactttagatgccggaaaattccagcat
tactttgataaagcccccctactgaatgtcccaggcagaactcatcctgtcgaaattttc
tacacaccagagccagaaagggattacttagaagctgccattagaactgtcatacagata
cacatttgtgaagaaatagctggggatgttctgttgttccttaccggtcaggaagaaatt
gaagaagcgtgtaagcgtatcaagagagaggtagatgctcttgggccagatgttggagag
ctcaaatgtattcctctgtattcaacactccctcctaatctccaacaaagaatttttgaa
gctccacctcccaacaaacccaatggcgctattggtcgaaaggtggtggtatcaacaaat
atcgcagaaacatcactaaccattgatggtgttgtgtttgtgattgatccagggtttgct
aaacagaaggtgtacaatccaagaatccgtgtagaatcattgttggtctcgccaatcagt
aaggcctctgctcagcagcgtgctggtcgagcaggtcgaaccagacctgggaaatgtttc
cgcttatacacagagaaggctttcaaaaatgagatgcaggacaatacctacccagaaatt
ctcagatcaaatcttggctcagtagttttacaactaaagaaattgggcattgatgatctt
gtgcactttgacttcatggatccaccagcacctgagacacttatgagagccttggagctg
ctaaactacctggcagcccttaatgatgatggtaatctgactgaattaggtgcaattatg
gctgagttcccacttgatccccaactggccaagatggttattgcttcttgcgatttcaac
tgctcaaacgaaattctgtctatcactgccatgctctcagtaccccagtgctttgtgcgc
cctaatgaggctaagaaggctgcagacgaggccaagatgagattcgcccacattgatggt
gaccaccttacgctgctcaatgtctaccatgccttcaaacaaaatatggaggatgtgcag
tggtgctatgacaactttgtcaactaccgttcactcaaatcagctgataacgttcgacaa
cagctgtccaggatcatggaccgattcagcctcaaacgtacctcaactgacttcaattct
cgtgactactacattaacatccgcaaggctcttgtatcagggttcttcatgcagattgct
catcttgaaagaactgggcattacatgaccatcaaagataaccaggttgtgcagcttcac
ccatccacttgtttagaccacaaaccaatggtttacaatgagtttgtcctaaccacgaaa
aactacatccgcacagtgacagatataaaacctgagtggctgataaaagtttctccgaac
tactatgacatgcagaacttcccacagtgtgaagcccggcggcagctggagagtattgtt
gcacgtctggaatctagacagtatagagaagggttctag
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