Penaeus vannamei (Pacific white shrimp): 113813415 Help Entry 113813415         CDS       T06111                                  Symbol Sym Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism pvm  Penaeus vannamei (Pacific white shrimp) Pathway pvm03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:pvm00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     113813415 (Sym)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:pvm03021]     113813415 (Sym)    03019 Messenger RNA biogenesis [BR:pvm03019]     113813415 (Sym) Transcription machinery [BR:pvm03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      113813415 (Sym) Messenger RNA biogenesis [BR:pvm03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      113813415 (Sym)     U7-dependent histone pre-mRNA processing factors      113813415 (Sym) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N Adaptin_N Npa1 CDC73_N PDXDC1-like_cen Motif Other DBs NCBI-GeneID:  113813415 NCBI-ProteinID:  XP_027221188 LinkDB All DBs Position 6:46394207..46403240 Genome browser AA seq 1095 aa AA seqDB search MSESEPTTRDRVVELLNTAAFLPSEKERIGQLVQVQELIIHREPDLLDSFFEEVAAFQTD RNSDVRKFVVGFIEEACKKDVAMLPRLVPNIQLLLQDEGVAVVKRVVQAAAQLHRATLAW LSSARTVTPEMEQVWHIITSIKNSIITMIDHDNDGVRTQAIKFLESLVLLQTYTEADSVV RDGEFNLDQVPLTLKVARPRKLEEEARMVLNKLIAFQGSIHISSVNLMTCMSSLTIIARA RPQFLGMIINALEILHANLPPTLTKSQVNSVRKHLKIQMLNLLKHPASYDYHEHITTVLN DLGITASEVRKNVNKSMPSKDQIRKRVRRDKSAEEVSESPNKKPRVDHEESSKNKKEKKE EVEVERKNSAIDITQRWLVEKLTPDNVASLVMVTMLNLPDEMPPLFSAGYSPITAAGTSP QIQHVGRLIASQLTAAGVGPGVEQAKEEEAKTSSNMDQESDEESKEISRLVGGKVQVQEE DTMQSGPVLVPAGVIGRPLRHKIKTMKLAEVTKPLSSSSNTKLQSLLFKRLMRCDKVMLH GEGPKHRMRILTVLSGCISHQESDALEDFILEDMQNRADLLFSWLFSEYSVNHDFSLINK ILNIGGKKVQKKDKNYQEILGNIVSKVLLKPASKERDEFLSRLFLECPHVPEDLILSLVR VGSQGTDSIISVANTLKDTAEWRPLTAKPALKTLSLLATHDQDSVREVVTPILLDLCEHE NLSEIVTEVATVYLKYLLLETPPDSLCSHNFGRPNEPNEWTEPLVKACLYLYLALLPLNQ ALIHDLAQVYVKTVNEAKRAILRLLEGPIRHMGMDSPQLLKLVETCPKGGETLITRIIHI LTEKAPPSEALVCRVRELYNRRVSDVRFLIPVLTGLSKKEVIAVLPKLIKLNPHVVKEVF NRLWGVTLDTGASPLTPVDLLVALHLIDPDKCDVKTVIKATGLCFAERGIYTAEVLAFVL QQLMEQPQLPTLFMRTVIQTLTHYPKLLSFIMNILQRLIIKQVWKQRKVWEGFIKCCQRA VPQSFTVLLQLPPAQLSDVFNSASDLHSQLLSHIATLTENQRAHIPASLLEVIEGHNPSS QGSRPVDLPPSAQEM NT seq 3288 nt NT seq  +upstreamnt  +downstreamnt atgagtgagagcgagccgactacgcgagacagggtggtggaactgctgaatacggcagct ttcctgccctcggagaaagagagaattggacagcttgttcaggttcaggagctgatcatc caccgtgaacctgatctccttgactcattctttgaggaggtggcagctttccagactgat cggaactcagatgtccgtaaatttgttgtcgggttcattgaggaagcttgcaagaaagat gttgccatgctgccacgtcttgtgccaaatattcagttgcttttgcaagatgaaggagtg gctgtagtgaaacgtgttgtgcaggctgcagctcagcttcaccgtgctacactggcatgg ctgtcctctgctcgcactgttacccctgagatggagcaagtctggcacattataacttcc attaagaattccattattacaatgattgaccatgataatgatggagtaaggacacaggcc attaagttcctagaatccttagtattgctgcagacctacacagaggctgattcagttgtt cgtgatggggagttcaacctcgaccaagttcctcttacactcaaagtagctaggccaaga aaacttgaagaggaggcaaggatggttctcaacaaactgatagctttccaagggtccatc cacatcagctctgtcaaccttatgacatgtatgtcgtcgctgactatcatcgcaagggca cggccacagttcctgggcatgattattaatgcgcttgagatccttcatgccaatctacct cctacactcaccaaatcacaagtaaacagtgtgcggaaacacctcaagatacagatgctg aacctcctgaagcatcctgcctcttatgattaccatgaacacattacaacagtcctgaat gacttgggaatcacagcgtcagaggtgaggaaaaatgtcaacaagtcaatgccatccaag gatcagatcaggaagcgggtgcggcgagacaagtcggcagaggaagtttctgaatcgccg aacaagaagcccagggtcgaccatgaggagagcagcaagaacaagaaggaaaagaaggag gaggtggaggtggagagaaagaactctgccattgacatcacccagaggtggttggtggag aagctgaccccagacaatgttgctagcctggttatggttacgatgttgaatctacctgat gagatgccacccttgttcagtgctggatacagcccaatcacagctgctggcacatcacct caaatccagcatgtaggaaggcttattgcatcacagctgacagcagcaggtgtagggcct ggggtggagcaagccaaagaagaggaggcaaagaccagcagtaacatggaccaagagagc gatgaggagagtaaagaaatttctcgtcttgtggggggaaaggtgcaggtgcaagaagag gatactatgcagagcggtccagtgttagtgccagcgggtgtaataggacgacccctgagg cacaaaatcaagaccatgaagctggcagaggtcacgaaaccactctcctcgtcctctaat accaaactccaaagcctactgttcaaacgactcatgcgctgtgacaaagtgatgcttcac ggggaagggccaaagcaccgcatgaggattctcacagtgttgtccgggtgtatcagccat caggagagtgacgcactagaagatttcatactggaagacatgcaaaacagggctgacctg ctcttctcgtggctcttctcggagtattctgtgaatcatgacttctcccttattaacaaa atcttaaatattggcgggaagaaagtgcaaaagaaggacaagaattatcaagagattctt ggcaatattgtaagcaaagttctactgaaaccggcttccaaggagagagatgagttcctg tctcggctgtttctggaatgtccacatgtgcctgaagatctcatactgtcactagtgcgt gttggtagtcaaggcacagactcgatcatctctgttgccaataccctcaaagatactgcc gaatggagaccgctcacggcaaagcctgcactgaagactctgtccctcttagcaacccac gatcaggattctgtaagagaagttgtaactccaatccttttggacctgtgtgagcatgag aatcttagtgagatagtcaccgaggttgctacagtgtacctcaagtatcttctgctggaa acaccgccagactccctatgttcgcacaactttggacgacctaacgaacccaacgagtgg acagagccattggtcaaggcttgcctgtatttatatttggctctgttgcctctgaatcaa gctctcattcatgatttagcacaagtgtatgtaaagacagtgaatgaagccaagcgagct atcctgcggctgctagaaggacctattcgtcacatgggcatggactccccacagctcctc aaattggttgaaacctgtccgaagggaggagagacactcatcacgcggataattcacatc ctcacagagaaagcacctcccagtgaagccttggtctgccgcgtgcgtgagctctacaac cggcgtgtgtccgacgtgaggttccttatccctgtcctcactgggcttagcaagaaggag gtgattgctgtcctgccaaaactcatcaaactcaatccacatgttgttaaagaggtattc aaccggttgtggggagtgacattagacacaggtgcttctccgctgactccagtggacctc ctggttgctcttcatcttattgatcctgacaagtgtgatgtaaagacagttatcaaagcc actggattatgttttgcggagcgtggcatttatacagcagaagtgttggcttttgtgctt cagcaactcatggaacagccacagttgccgacactcttcatgcgcacagtcatccagacc ctaacgcactacccaaagcttcttagctttataatgaatatattacagagactcattatt aagcaggtttggaagcagagaaaagtctgggaaggtttcatcaagtgttgtcaacgagcc gttcctcagagtttcacagtgctccttcagcttcctcctgcccagctgtccgatgtattt aacagtgcctccgaccttcattctcaactcctttcccatattgctacactcacagaaaac cagcgagctcatataccagccagcctgctagaagttattgaagggcacaatccatcatct cagggatcccggccagttgatttgcccccttctgcccaagagatgtag

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