Penaeus vannamei (Pacific white shrimp): 113814774
Help
Entry
113814774 CDS
T06111
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X2
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113814774 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113814774 (fand)
03041 Spliceosome [BR:
pvm03041
]
113814774 (fand)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113814774 (fand)
Spliceosome [BR:
pvm03041
]
Complex B
Other components
Prp19-related factors
113814774 (fand)
Complex C
113814774 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
113814774
NCBI-ProteinID:
XP_027222629
LinkDB
All DBs
Position
31:15581944..15600537
Genome browser
AA seq
846 aa
AA seq
DB search
MIMDASSIIIEADDVQYEEELLRNPFSVKHWQRYIEHKKDAAPEKLNIIYERALLQMPGS
YKLWHLYLRLRMEQVKGRCVTDPEFESVNNTFERALVFMHKMPRIWIDYCRFLMNQRKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMLYNIPETAVRVWRRYLKLCPEDTEDYISYL
MSIGRLEEAAKRYEWCVNTDSFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEYYIISALFERARDVYEEGLRSVMTVRDFTQVFDAYAQFEELTL
KKRMEEVGIEVDVEEETELELRLARYEDLMQRRPLLLNSVMLRQNPHNVLEWQKRVTLYE
GKPKMIVATYMEAVKTIDPKQATGKLFSLWVNFAKFYEENNQIVDARIIFERATEVLYVK
VDDLASVWCEWAEMEIRHGNEEEALKLMKRATAPPPQKVAYNDESEPVQRRVYKSLKLWS
MYADLEECLGTFKSCKAVYDRIIDLRIATPQIIINYGMFLQENSYFEEAFKAYEKGISLF
KWPYVYDIWNTYLTKFLERYKGTKIERARDLFEQCLEKCPPNYARNLFLLYAKMEEEHGL
ARHAMQVYSRATKAVPPEEKLSIYNIYLQHAQQIYGVTKTREIYQEAIDDLPDEGCREMC
LRFAEMERKLGEIDRAREIYAYCSQICDPRITPEFWAKWTDFEVAHGNEDTMKELLRIKR
SMQAKYNTQVNMMSAQMLASAGSVAGTVSDLAPGAKDGMRMLEARAVAMNKEEQMSTSVA
PSAAGGSKIMFVRGSTTKRDDEVADTARTANPDEIDLDDDDDDDDDSDMPQQREIPAAVF
GELKKE
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgattatggatgcctcatctataatcatagaggctgacgatgtgcagtatgaggaggaa
cttcttcgtaatcctttttctgtaaaacattggcagaggtacatagaacacaagaaagat
gcagcaccagaaaagcttaatatcatatatgaaagggcacttctccagatgccaggcagc
tataagttgtggcatctttatttaagactgcgtatggaacaagtgaaggggcgatgtgtc
acagatccagagtttgagagtgtaaataatacctttgaaagagccttagtattcatgcac
aaaatgcctcgtatatggatagattactgcagatttttgatgaaccagagaaagataaca
agaaccagaaagacatttgaccgcgcattatgtgctctacccattacccagcacaaccgc
atatggccactttacctcaaatttgttatgctatataatattccagaaactgcagtaaga
gtctggagaagatacctaaagctttgccctgaagatacagaggattacataagctatctt
atgtccattggacgattggaggaagctgccaagagatacgagtggtgcgttaatacagat
tcatttacctccaagtacgggaaatcaaaacatcagctatggtcggaactctgtgagcta
atctctaaaaacccacaggagacaagtctgaaaaatgcagaggccatcattcgtcatggc
ctgcagcgttacactgatcaggtgggaatgctttggaactccttggcagaatattatatc
atcagtgcactctttgagagggcaagggatgtctatgaagaaggtttacgaagtgttatg
acagtaagagatttcacacaagtgtttgatgcttatgctcagtttgaagaactgacacta
aagaaacgaatggaagaagttggcattgaggtggatgtagaagaggaaacagaattggaa
ttacgcctggcacgatatgaggacctcatgcaacggcgccccctccttttgaattctgtt
atgcttcgccagaatccacacaatgtattagaatggcagaagcgtgtaactctctatgaa
ggaaagccaaaaatgattgtagcaacatatatggaagcagtgaaaacaattgatccaaaa
caagccacaggaaaacttttttcattgtgggtgaattttgcaaagttctatgaagaaaat
aaccagattgtggatgcgcgaatcatcttcgaaagagcaactgaagttctctacgttaaa
gtagatgaccttgcaagtgtgtggtgtgaatgggctgagatggaaataagacatggaaat
gaagaggaagctctcaagctgatgaagcgagcaacagcacctcccccacaaaaggtggca
tacaatgatgaatctgagcctgtccagcgacgcgtctacaagtctttaaaactgtggtct
atgtatgctgacttagaagagtgtttgggtaccttcaagtcctgcaaggctgtttatgat
agaattatagatctgcgaattgccacaccacaaattattataaattatggcatgtttttg
caggaaaacagctattttgaggaagcattcaaagcttatgaaaaaggaatttccctcttc
aaatggccatatgtatatgacatatggaacacatatctcacaaaattcttagagcgatac
aagggcacaaagattgaaagagcaagagacttatttgaacagtgcttggaaaaatgtcca
ccaaattatgcacgtaacttgttcctcctgtatgcgaaaatggaggaagaacatggatta
gcaaggcatgcaatgcaggtatacagtcgggctactaaagcagttccacccgaggagaag
ttgtccatttacaacatctacttacaacatgcacagcagatatatggtgttactaaaaca
agagagatttaccaggaggctattgatgacctacctgatgaaggttgtcgagaaatgtgt
ttgcggtttgctgaaatggagcgtaaattaggcgagatagatcgggctcgtgaaatctat
gcttactgcagtcagatatgtgatccaagaatcacaccagaattctgggcaaaatggact
gattttgaggttgctcatggcaatgaagacactatgaaggagttgctgcgtataaagcgg
tctatgcaggccaagtacaacactcaggtgaacatgatgtcagcccaaatgttagcatct
gcaggttcagttgctggcacagtgtctgatctggcaccaggagccaaggatggaatgagg
atgcttgaggcccgtgctgtagccatgaacaaagaggaacagatgtccacttctgttgca
ccatcagcagctggtggttccaagatcatgtttgtccgtggttcaactaccaaaagggat
gatgaggttgcagatacagctcgcactgcaaaccctgatgaaattgatttagatgatgat
gatgacgatgatgacgacagtgatatgccacagcaaagagagatcccagcagcagtgttt
ggtgaactgaaaaaggagtag
DBGET
integrated database retrieval system
