Penaeus vannamei (Pacific white shrimp): 113815953
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Entry
113815953 CDS
T06111
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50.L isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03440
Homologous recombination
pvm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113815953 (rad50)
03450 Non-homologous end-joining
113815953 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvm03032
]
113815953 (rad50)
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113815953 (rad50)
DNA replication proteins [BR:
pvm03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
113815953 (rad50)
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
113815953 (rad50)
BRCA1-C complex
113815953 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
113815953 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
GAS
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
FAZ1_C
AAA_29
ABC_tran
Zf_2nd_IFT121
AAA_13
Motif
Other DBs
NCBI-GeneID:
113815953
NCBI-ProteinID:
XP_069982558
LinkDB
All DBs
Position
10:complement(22786301..22816645)
Genome browser
AA seq
1311 aa
AA seq
DB search
MSKLEKMQIMGIRSFGPEEPRKIQFFSPLTLILGQNGCGKTTIIESLKYITTGDAPPGCG
KGASFVHDPKLAKEVTVRGQIKLMLKDTKGATLVTTRSLEATQKLKKIECKTIDATLQRR
RPDGSTDAISSKCADFEAEISNALGVSKPILNNVIFCHQEESNWPLDEGKKVKEKFDAIF
NATKYIKCLDTIRKLRAEMKTKVKNMHEVIESLKKWRDEANRKRVDLKESCEQQNKIKVQ
KSKLKEELEPIRERLKEICDLEENVGRLNGELIGEKHKLEALRQSQADLRATLSEQLDCS
DEELYHMIQDFQKNLESMEEEQEKVMSRMQSIQREKEKNQTEISRTERLRGEYEAAYKTQ
QDYIKERNRQMSSITKEFSFAEFMGVEDFSEQQAQCLLSILLKLVEEERKKIAEKKEEYE
RKEEAVQKEIDGLRTSEAALDHDIKTKGKQLDETGKKIRQLKQALMRNESDLSDMDLDSL
KVELTQVEDMIAKEESKVNMTELTAEIERAKKNKREGEHEVDEIKRVVAKMNRQANARSQ
YDIHMKEKKELENRIEFLKRKHADEFEHLLEAIPDDNIKNKVDACADSLRRRVTELRQEI
EGLNKRRTHLSVSIKGQKQQQSRKEQEIRDLESKIDNICDGMNLDEALEKSKEVKDNLTR
ERGDLSSSITVLNRFTAKLRQRDCCPLCHRDFPSKDDVNQLIEELEGKVISIPGKLEQVK
VKLDKQEKVHDQIIQLKPQRNLANSAKVELDKIRAQIEEEMKELAKVDSDLESQKEMLDM
TQGDEEMTRQIQPDVIIIENNLRKVKQLKIQIDDLQATLGSSGIDGGMTMEEAVTRQSEL
EDKLRKLQAKVEELQEQLQEHKDRLQGLKDRKLRLSTQELELRTKLQETEKLKEDISKLD
EERNKLTEDIEKAQVDIAPFKFQITTKTSEKTKLMEEKDSWIDTQNNKVSTIVETHRRAN
DLHKNISVYISRREENQLKEIRKKVSTLQQAAVQLDSQKKMVDEQNRDIEKELANQKQRK
RNLDDEKKIREKETEAKRMQKVIRNLEERIRGFDYDKLIDEKTELLQKSSRIDNQGGILD
GRLQEVNKTIQTLESELRRKEIRDAEKNYKQKFVEMKCTDVAADDLNKYYKVLDTAIMQF
HSDKMRTINSIIRELWRSTYRGNDIDYIEIQTDEAESQGADKRRTYNYRVVMVKNGTDMD
MRGRCSAGQKVLASLIIRMALAETFSTNCGILALDEPTTNLDRENIEALAFALLEIVNKR
ANQQNLQLIIITHDQEFLEKLGHPDYTDYFSLVERNDRGLSTISQKEISQL
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagttggagaaaatgcaaattatgggcattaggagcttcggcccggaagaaccc
agaaagatccagtttttttcacctctgacactcatcttaggtcaaaatgggtgtggaaaa
acaactataattgagtcattgaaatacatcacaacaggtgatgctcctccaggctgtgga
aaaggagcatcatttgtccatgatccaaagttagcaaaagaagttactgtgcgtggtcag
atcaagttgatgctgaaagacaccaaaggagcaactcttgtaacaactcgttccttggaa
gccacacagaaactgaagaagattgagtgtaagaccatagatgcaacattgcaaaggagg
cggccagatggcagtacagatgctatatctagtaagtgtgctgactttgaagcagagata
tcaaatgccttgggtgtatcgaaacctatcttgaacaatgttatattttgtcaccaggag
gaatcaaattggcctctggatgaaggtaaaaaagtgaaagaaaaatttgatgccatattc
aatgccaccaaatacatcaaatgtcttgatacaatacgtaagctgcgtgctgaaatgaaa
acgaaggtgaagaacatgcatgaagtcattgaaagcctcaaaaagtggcgagatgaggca
aaccgaaagcgtgttgacttgaaggagtcttgtgagcagcaaaataaaattaaggttcaa
aaaagtaaactgaaggaagaactggagccaattcgagaacgtctaaaggaaatctgtgac
ttggaggagaatgttggccgtctgaatggagagctgattggagagaagcataagcttgaa
gccctaaggcagagccaagcagacctgcgggcgactctttcagagcagctggactgttcg
gatgaggagctgtaccacatgatacaggatttccagaaaaacttagagagcatggaagag
gaacaggaaaaggtaatgtctcggatgcaaagcattcagagagagaaggagaagaatcaa
actgagatatctaggacagaaagacttcgaggagagtatgaggcagcttacaaaacacag
caggattacatcaaggaacgaaacagacagatgtcaagtattaccaaggaattttccttt
gcagaatttatgggtgttgaagactttagtgaacaacaagctcagtgtctcttgtccata
ctcctcaagcttgttgaagaggaacgcaagaagattgcagagaagaaagaggagtacgaa
aggaaagaagaggcagtgcagaaggagattgatggattaagaacctctgaagctgccctg
gaccatgacataaagaccaaaggaaagcagttggatgaaacgggcaagaagatccgccag
ctcaagcaggcactaatgcgtaatgagagtgatttgtcagacatggatttagactcacta
aaggtggagctcacccaggtagaggatatgattgcgaaggaagagtcaaaagttaatatg
actgagcttactgcagagatagaaagagccaaaaagaacaaacgagaaggagagcatgaa
gttgatgaaatcaaaagggtagtggcaaagatgaaccgtcaggcaaatgctcgatctcag
tatgacatccatatgaaggaaaagaaggagttggaaaatagaattgaatttttgaagcgt
aagcatgctgatgagtttgagcatctcctagaagctattcctgatgacaacattaagaat
aaagttgatgcttgtgcagatagccttcgaaggcgtgttactgaactcagacaagaaatt
gaaggactgaataagcgtagaacccacctgtctgtgagcataaaaggacaaaaacagcag
cagagtcgtaaagaacaggagatcagagacctggagagcaaaatagacaacatttgtgat
ggtatgaacctagatgaggcccttgagaagtcaaaggaagtgaaggacaatcttacacgt
gaacgaggagatctctccagttccatcactgtcttaaatcgtttcactgccaagctccgt
cagagagattgctgtcctctctgtcacagagacttcccatcaaaagatgatgtcaatcaa
cttattgaggagcttgaaggaaaggtgatcagcattccaggtaaattagaacaggtcaaa
gtaaaacttgataaacaagagaaggtccatgaccagattatacagcttaaaccccagaga
aatttggcaaacagtgccaaggtggaattagacaagatcagagcccagattgaagaggag
atgaaggagttggctaaagtagactcagacctggagtcccagaaagaaatgctggacatg
acacagggagatgaggagatgacaagacaaattcagccagatgtgatcataattgaaaac
aatctgaggaaggttaaacagctcaagattcaaattgatgatctccaggcaactttagga
agctcaggtatagatggtggaatgaccatggaagaggcagtaacccgacagagtgaactg
gaagataagcttcgcaagttgcaggccaaagttgaagaattgcaagaacagcttcaggaa
cacaaggatcgtcttcaaggacttaaagaccgcaaattgagactttccacccaagaactt
gagctgaggaccaagcttcaggaaacagagaaattgaaggaagacatttctaaactagat
gaggaacgcaacaagctcacagaggacatagaaaaggctcaagtggatatagcacccttt
aagttccagataacaaccaaaacttctgagaagacaaagctcatggaagaaaaagactct
tggattgacacccaaaataataaggtgagcacaatcgttgagacacacaggagggctaac
gatttacacaagaatatcagtgtatacatttcaagaagggaagaaaaccagctgaaggaa
attcgtaagaaggtttctactctacagcaggctgccgtacaactagattcacaaaagaag
atggttgatgagcaaaaccgtgacattgagaaggagcttgccaatcagaagcaaaggaaa
cgtaacctggatgatgaaaaaaaaatccgtgagaaggagacagaagcaaagcggatgcag
aaagtgattagaaatttggaggaacgtataagaggttttgactatgacaagctcattgat
gaaaaaacagaactcctgcagaagtctagtagaatagacaatcaaggaggcattctggat
gggcgtttgcaagaggtcaacaaaactattcagacactggaaagtgagctgagaagaaag
gagattcgagatgctgaaaagaattacaagcagaaatttgtggaaatgaagtgcactgat
gtagctgcagatgatttgaacaaatactacaaagtcttagatactgccataatgcaattc
cactcagacaagatgcgcacaatcaacagcattatccgagaactttggcgttcaacctat
aggggcaatgacattgactacattgagatccagacagatgaggcagagtctcaaggtgca
gacaagcgacgtacgtacaattacagagttgtgatggtgaagaatggaacagatatggac
atgcgaggacgttgttctgctggtcaaaaagtcctagcttcacttatcatcaggatggca
cttgcagagacattcagtacaaattgtggcatcttggccctcgatgaaccaaccacaaac
ttagatcgtgaaaatattgaggctctagcctttgctctgttagagattgtaaataagagg
gcaaaccaacaaaatctgcaattaattatcattacacacgaccaagaattcctggagaag
cttggtcatcctgattacacagattatttttccctagttgaaaggaatgacagaggatta
tccactatcagtcagaaggagatatcacaactataa
DBGET
integrated database retrieval system
