Penaeus vannamei (Pacific white shrimp): 113816102
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Entry
113816102 CDS
T06111
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvm03009
]
113816102
Ribosome biogenesis [BR:
pvm03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
113816102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RTP1_C1
Motif
Other DBs
NCBI-GeneID:
113816102
NCBI-ProteinID:
XP_069979804
LinkDB
All DBs
Position
1:46087367..46112882
Genome browser
AA seq
2834 aa
AA seq
DB search
MKEKPNRQAHKATNTFTFKKFNEKVRGLRVSARKFLLQRAQSADTDQTSVFHQTFLKCKE
LNLTEAFQAFREDLKYSIVTTAQLVHHEKHIATCLGKHLAVLSSPALQPLLDLLVAFAND
IPQEFYQHHFYKFLSLLIRQLSTKEPEQIESVFLCIVSLFVVLQKYLRNDLFELYHVHNY
ARLLSKSHPWYINELAAQSLAFLVRKAPKMENFLGMALRKLKKDETQVEGLGRLFAALMK
SDVVQRLHSSTPVVLNHLLNLLAGEDVPPDLALQAVSSGILTLNFYITTPHPDKVTRWEV
SWEEDSKLVWPTVWDQVKSILPHTQTSDSCHHLHAVIQIIQKLVSFKKGALVADLNDALN
QCTAIIQMPLPDSIGTTVCDIVSVLLTSRHQPLTHAMLHQTVTSIFMAQYSHSVKFSFVK
QMVDFERFDTEILPIFLHYLSTVISTRKDPDVHKDVVSVIADIILTKQVPCNSGLDLSSW
EKYPIDFTQILAKMDTSVENNIPSYIEDKVSEGIQDDFSNLEELLQILVCLPHISPLNHE
RLKPHFQEILKTSIMNLNDVGSKITPIVDVTPRKKKAKVADILVDVNVKYDISLTSRRLL
FLVGMVVEGMAHVLSGEEFLACLNKCSLLDVLVQKPHYRENVHFLKAIDLQLSIASREEA
TDMMNEAFLKRIYPSLAPVLASANPQVRLLGTHILSLFPVTLPPPPENVENVENIFQIML
KVEMTPVTPFSFRDRVRFLDTINGDLVKLHKPLCDTYDHAPLLFFLGQLFVNYKDLWNPC
LKGISSYAHTLPLDSFWQLWFAKLKIATHNCQQILLNKVVDPDDDLEIENEIIQTVVQHL
SSHQSYSKVVIKADHMNYRDLMWRSMEKFPDVCEARSRDLVPLFFDFLHNELFPVDFNVA
PTQDISKRKREETTQLEGEISMNESDLDALTSIEDKINDSALDDELESEVRSRKAPLKSL
GEQLTVLSKFHNPRKLSQTKKLEDMYKEFLTHPAPSVQRRALNCIMTYNYPYLVPYTEFL
YKIIDDKSFKNAITLFSLDGSEQSILEEHREDMMPYLMRILFGKMHSKAGTGTSGKGKIL
IRKGVILRYLAGARESELRIFLDLAFDVLLSHIEGDALSMVERTKQTLDITKVVPLGRLR
GALTTLDNIISKMGNLLMEILPILLKVILFIANLATTLLVQRTEIGDRSVSLLKHLRQDS
HRRLIAFFKKFENYSWSENEINAVFEAVVWPNLKRLPDEGISSPSTLLILFKCWGENPRY
FPLLTKCHKEDHTLTPLPYVIKLLNHEKCKPSVANVILDMVGNLINLQDFEDVEEEAYME
GKKPLPIPCSPVIPVKRLQSRDGTHEQNFGTAMLVPHMEGLLKSMKNMVTKLSKNQLVKE
RDLTILTNLSEWVTNKENSSDLLSLIAPLIVKKNVEKIEKVPELLTMCSHLLQVVDNSAE
YLAPFISQFGTMGSRDARDALCNVVSVIASSNPKFKELAEMAEDLNSWNPKMVEEVDYER
RLTAHDHFKKYCATTEVIDVEYCQLFLFNSMYLIRQVEDSSLQDMSSFTLCQMIDMLVRL
QPKYKNEFQLIVTNNFLTEIRKGLHSKKEKVRIEVISLLRQLILKCHDQVERLQDLYKLV
NEAETDMDFFCNMGHIQRHRRARAMAKLSEKLDSGEISLVSSSVDGYLLPLVTSYLFQEA
FIKDDYLITSSISCLGSLAKKMPWYSYQKLLKYYINMLSKQELKYLKQAVRVLESVLDGF
HEEVEIPVVEDKTRNDNSKSVATTATPVGTVDVQAEMEEEEFVEKEEENLTAKKEEVEEG
LRKEEAEEEVADDEEEEELEKEIEQQANFSKGQRVYEALVGVFIPQLQKMLAARSKADME
HKVNKSKYPEDEDIKRIPLAFALVKLLKKLPQKMLDANVNSVLMKVIHFLKSRAESIRDE
ARSMLVKIMVEIGGSYLLWVVRDLRSILTRGYQAHVLVYTLHAILSQLRPLLTSRDINVC
LTDMIEICKEDILGLQAEEKEVSEITRKVKESRGDKSYVILAFTAEFISAECLQEIIVPL
KEVLTLTQDKKVVNKMVRCLSEICSGLERNENISITQKSVFIYGMLNERILTLTTEKEEK
KPSEKKGQQQIDSFILEPEPKKARLNPKTSFKATAHVLIEFAVQFLAGLLKKGKFVSEDK
EHAMLLDPFLKVLSKCIDSEYPEICVYALRCISMMIKFPLPSLQTDLKSICEQMFLILHK
FSSPELAKGKIYDLVQLSFKSLAHIVKSVDSYLLNEEELRIMLQYLNGNIQDRNQQQTAF
VVLQSIIARKINALELHKLMKTVQKMSITCGGLNALTQARTTFYTYLLTYPMKPKMIEEN
ITFYLGNISYSELDGRLSASIMMNNIISNFPAKLFSKKLETNMWFTFSKQLIVEESQENK
TLLHKALKTMFKRSKEKKELIDLCLQLIRERPKATVKTNSVAMQMGLKSLSAFLDVTVKL
LPEIILSKAAPMIIELLEPSRYSMQFTNIQDDTEDVNLSQETCHKDNCIVALLEVFTKIV
RAFFTHEDWNKHTNPDVWKYVQAHLLYPHIQVRLNAAGLIGYLLAAHPVEGSVSSPLTTN
TDEARSLALDICEQLRTEAPIGMALLTQLSLSVIRNLIYLVRHSCKVPLVKNKFGGEVEK
VNDDNELANGEEKNDIVIGNEAEPIPSAVWVVRHVGNLAYEELQRHGRDSTIVRESLLNL
IAGLVVVVGEKINESILLGYIVKHLARELSDEKLPENLATKTKEVGSMVKGIVGVEVYTR
HLTAAQVMLAKKRHERKARSLQQRALNPVLAEKKRKKKNLTSRESKKRKIAERKGKIIRK
KKAKLIDRAVVADR
NT seq
8505 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagaagcctaatcgccaggctcacaaagccaccaacaccttcacgtttaagaag
tttaatgagaaggtgcgaggactccgtgtcagtgctaggaaattcctcctgcagcgagca
caaagtgcagacacagaccagacttctgtgtttcaccagaccttcttgaagtgcaaggaa
ttaaatctcactgaagctttccaggccttccgagaggatctgaaatacagcattgtgact
accgcccaactcgttcaccatgaaaagcacattgctacatgtttggggaaacaccttgcg
gttctcagctccccagcattacagcctctgttggatctgctggttgcctttgctaatgac
atcccacaggaattctaccaacatcatttttataagttcctttcattgttgatacgacag
ttgtccaccaaggaaccggaacagattgagtcagttttcttgtgtattgtttccttattt
gtggttcttcagaagtacctgcgtaatgatctatttgaattatatcatgtacataactat
gcaaggctgctctccaaatcccatccatggtatattaatgagctggctgcacagagtctg
gcatttttagtgagaaaggctcccaaaatggaaaatttcttgggcatggctctgaggaag
ctgaagaaagatgaaacccaagtggagggactaggcaggttgtttgcggcattgatgaaa
tcagatgtagttcagcgcttacatagttccactccagttgtactaaatcatttgttgaat
ctgcttgccggggaagatgtaccaccagacctagcattgcaggcagtgtctagtggtata
ctgacattaaacttttacatcacaacacctcatcctgacaaagttaccaggtgggaagtg
tcttgggaggaagactcaaaactagtgtggccaacagtctgggatcaggtgaaatccatt
cttccacacactcaaacatcagacagctgccatcatctacatgctgttattcagataatt
cagaaattggtttcattcaagaaaggtgctttggttgcagatttgaatgatgctttgaat
cagtgtactgccataatccaaatgcccttacctgacagtattggcacaactgtgtgcgac
atagtgtcagttttgcttacatctcgacaccagccactgacacatgccatgctccatcaa
acagtaacctcaatattcatggctcagtactctcattcagttaaattttcttttgtaaag
caaatggtggactttgagagatttgatacagaaattctcccaatattcctacattacctg
agtacagttataagcacaaggaaggacccagatgtccacaaagatgttgtttctgtcatt
gcagatataattttgactaaacaggtaccttgtaattcaggcctagatttaagttcttgg
gaaaaataccctatagatttcacacaaatattggcaaaaatggacacatctgttgagaat
aatattccatcttacattgaagacaaagtatcagaaggaattcaagatgacttcagcaac
ttggaggagttacttcaaatacttgtgtgtctacctcacatatcaccattaaaccatgag
aggttaaagccacacttccaagagattctgaaaacatcaattatgaatttgaatgatgta
ggaagcaaaattactcctattgtagatgtgactcctaggaagaaaaaggcaaaagttgca
gatattttggttgatgtaaatgtcaaatatgatatttccttaactagtagaagattgctg
tttcttgtaggaatggttgttgaagggatggcacatgttcttagtggtgaagagtttctt
gcatgcttaaacaaatgttccttattggatgtactagtgcaaaagcctcattacagggaa
aatgtccatttcttaaaagcaatagatctacaattatccatagcatccagagaggaagca
actgatatgatgaatgaagctttccttaaaagaatatatccttcacttgcaccagtcctt
gcctctgcaaaccctcaagtgcgcctcttagggacgcacatcctgtccctgtttccggta
acacttcctcctccaccagagaatgtggaaaatgtggagaacatattccaaataatgctg
aaggttgagatgacacctgtgacaccattttctttcagggatcgggttcgtttcttggac
acaattaatggtgacctcgtcaagctacataaacctttgtgtgacacttatgatcatgct
cccttgctcttctttcttggtcagttatttgtaaactacaaggatttatggaatccttgt
ctcaaaggaatatcaagttatgcacatacccttcctttggattcgttctggcaactttgg
tttgcaaaactgaaaattgcaactcataactgtcagcagatattactcaataaggtagtg
gaccctgatgatgatcttgaaattgagaatgaaattatccagacagttgtgcagcatttg
tcaagtcatcagagctactcaaaagttgtcattaaagctgatcacatgaactacagagac
ttaatgtggaggagcatggagaaattccctgatgtgtgtgaggctcgtagtagggatctg
gtaccacttttctttgatttcttgcacaatgaactctttcctgttgattttaatgtagct
cccacccaagacattagcaagagaaaaagagaagaaactacacaattggaaggagagata
agcatgaatgaaagtgatttggatgccttaaccagtattgaagacaaaattaatgattcc
gcattagatgacgagctagaatcagaggtgcgctcacggaaggcaccactgaaatctcta
ggtgagcaattgacagttctttctaagttccataacccaagaaagttgtctcagacaaag
aagttagaagacatgtacaaggagtttcttacacatccagcaccttcagttcagagaagg
gccctcaactgcataatgacttacaattacccatatcttgtgccctatacagagtttttg
tacaagattatagatgacaaatcctttaagaatgccatcacgctcttcagtttagatggc
tcagaacagtctattttagaggagcatcgtgaagatatgatgccttatctcatgaggatt
ctctttggtaagatgcattcaaaggctggaacaggcacatctggcaagggtaaaattttg
attcgaaagggtgtgatattaaggtacttggctggtgcgagggaaagtgaattaaggata
ttcctcgatttggcttttgatgttctgttgagtcatatagagggagatgctctttccatg
gtagaaagaaccaagcaaactctcgacatcacaaaggtggtgccactggggaggctgcga
ggtgctctaaccacattggacaatattattagcaaaatgggcaatctactcatggaaata
ttgcccattcttttaaaggtgatactgttcatagcaaacctagcaacaacacttcttgtg
caacgtacggagattggagacagatctgtttcgctcttgaaacacctgcgtcaggattca
catcggcgacttatagctttctttaagaaatttgaaaactacagctggtcagagaatgaa
ataaatgctgtgtttgaggcagttgtgtggcccaatttgaagcgtctgcctgatgaaggt
ataagttcaccttcaaccttacttattctcttcaaatgctggggagagaatccaagatat
tttccattacttactaaatgtcacaaagaagatcataccttaactccattaccatatgtt
ataaagcttctaaaccatgaaaaatgcaaaccctctgtggcaaatgttattttagatatg
gttggaaatcttattaaccttcaggattttgaagatgttgaagaagaggcatacatggag
ggaaagaaaccattgccaattccttgttcaccagtcattccagtcaaaaggttgcaatca
cgagatgggacacatgagcagaattttggcacagcaatgcttgtgcctcacatggaaggc
ctcttgaaaagcatgaagaacatggtaactaaattgagcaagaaccaattggtaaaagag
cgtgacctgactattctcacaaatctctcagagtgggtcacaaacaaagaaaacagcagt
gatcttttaagtctgattgcacctcttattgtcaagaaaaatgtagaaaagattgaaaag
gttccagagttgctcacaatgtgcagtcaccttttgcaggtagtagacaattcagcagaa
tatctagcaccattcatttctcagtttggaaccatgggcagtcgggatgcaagagatgca
ctttgtaatgtggtttcagtaatagcctcgtctaatccaaagtttaaagaacttgcagag
atggcagaggatcttaattcctggaaccccaaaatggttgaagaggttgactatgagaga
agactgactgcccatgaccatttcaagaagtattgtgcaaccacagaggtaatcgatgtc
gagtactgtcagctcttcctttttaacagcatgtacttaatacgtcaggttgaagattca
tcactgcaagatatgtcaagctttacgttatgtcaaatgatagacatgttagtgagactc
cagcctaaatataaaaatgaatttcaactgatagtgacaaataatttcctgacggagatc
agaaaaggattacacagtaagaaagaaaaagtcaggatagaggttatatctttactgaga
cagttaatcttgaagtgccatgatcaagtagagagacttcaagatctttataagctagtc
aatgaagctgaaacagatatggacttcttttgcaacatgggccacatccaaaggcacaga
agggcacgtgcaatggcaaagctctcagagaagcttgacagtggagagatttcactggta
tcttcatcagtcgatggctaccttttgccattggttacatcatacttattccaagaggca
tttattaaagatgactatttgataacaagttccattagttgcttagggagtttagccaag
aaaatgccatggtactcatatcaaaaattattgaaatattacataaatatgttatccaag
caggaattgaaatatctaaagcaagctgtaagagttttagaatcagttcttgatggattc
catgaagaagtagaaataccagttgttgaggacaaaacaaggaatgacaactctaaatca
gtagctactactgccactcctgtaggtacagtggatgttcaggcagaaatggaagaggaa
gagtttgtagagaaagaagaggaaaatttgacggccaagaaagaggaagtggaagaaggt
cttagaaaggaagaggcagaggaagaggttgcagatgatgaagaagaagaggaattggaa
aaagaaattgaacaacaagccaactttagcaagggacaacgagtgtatgaagccttagtt
ggtgtgtttattccacaactccaaaagatgttggcagcacgaagtaaagctgacatggaa
cacaaggttaataaaagcaaatatccagaagatgaggacattaaacgtattcctctggct
tttgccttggtaaagctccttaagaaacttcctcagaaaatgctggatgctaatgtaaac
agtgtgttaatgaaggtgattcactttttgaagtctagagcagagagcataagagatgaa
gcccgcagcatgcttgtcaagatcatggtggaaattggagggagttacttgctgtgggta
gttagagatttgcgtagcattttgactcgaggttatcaagcacacgtattagtttataca
ctacatgctattctttcccaactccgaccattgctgacttccagagatatcaatgtctgt
ctgacagatatgatagaaatctgtaaagaagatattcttgggctgcaagcagaggagaag
gaggtcagtgagattaccaggaaggtgaaggaatcacgtggtgataagagctatgtaatt
ttggcattcactgcagaattcatatctgctgaatgtcttcaggaaatcattgtaccatta
aaagaggtgctcactttgacacaagataagaaagttgtaaacaaaatggtgcgttgcttg
tctgaaatatgcagtggattagagcgcaatgaaaacatctccatcactcagaagtcagtg
ttcatttatggcatgctgaacgagagaatactaaccctaacaacagagaaagaagaaaag
aagccatctgagaagaaaggccaacagcagatagattccttcatcttagaaccagaaccc
aagaaagctcgacttaatcccaagacatcatttaaagcaaccgcccatgtccttattgaa
tttgcagtgcagtttcttgctggtctgctgaaaaagggcaaattcgtatcagaagataaa
gaacatgccatgttgttggatccattccttaaggtgttatcaaagtgtattgattcagaa
tatccagagatatgtgtgtatgctcttagatgcatcagtatgatgatcaaatttccactt
ccttctctgcagacagatttgaaaagcatatgtgaacagatgtttttaatactgcataag
ttctcctccccagaacttgccaaaggaaagatttatgaccttgtccaattatcattcaaa
tctcttgctcatattgtgaagtctgttgactcgtacttgctgaatgaggaggagctgagg
attatgttacagtatttaaatggtaatatacaagaccgcaatcagcagcaaactgctttt
gttgttttgcaatcaataattgcacgcaaaattaatgcacttgagttgcataagttgatg
aaaacggttcagaaaatgagtataacatgtggtgggttaaatgcattaacacaggcacgc
acaacattttacacctatttgctcacttatccaatgaagcctaaaatgatagaggagaac
attactttttaccttggaaatatatcttactcagaactagatggtaggctatctgccagt
atcatgatgaacaatataattagtaactttccagcaaaactttttagtaaaaagttagag
acaaatatgtggtttactttctctaaacagcttatagttgaagaatcacaagagaataag
actttgttgcataaagcacttaaaactatgtttaaaagaagtaaagagaaaaaagaactg
atagacctttgtctccagttaataagagagaggccaaaagctacagttaagacaaattct
gttgcaatgcaaatgggtctaaaatcactaagtgcttttcttgatgttacagttaagctt
cttcctgaaattattcttagtaaagcagcaccaatgataatagaacttctagagccatca
aggtatagtatgcaattcaccaacatacaggatgatacagaggatgtaaacttgagccag
gaaacctgtcataaagataactgtatagtggcgctactagaagtattcacaaaaatagta
agggcatttttcactcatgaggattggaataaacacactaatcctgatgtctggaagtat
gtgcaagctcatttactctatccccacatccaagtcagattaaatgcagctgggctaatt
ggatatttgttggcggctcatcctgttgaaggcagtgtatcatctcctcttactacaaac
actgacgaagcacgctcacttgctctagatatatgtgaacagctgaggacagaagcccca
attggcatggcactcttaacgcagctctcgctttctgttattagaaacttgatatatttg
gttcgccattcttgtaaggttcctcttgtaaagaataaatttggtggagaagttgagaaa
gtgaatgatgacaatgaattagccaatggtgaagaaaaaaatgatatagttataggaaat
gaagcagagcccatccccagtgcagtttgggttgttcgacatgttggaaatctggcatac
gaggaacttcaaaggcatggcagagattccaccattgtccgtgaatctctgctcaatctc
atagcaggcttagtggttgtggttggagagaaaataaatgaaagcattctgttaggctac
attgtaaaacacttagcccgtgagctctcagatgaaaagctcccagagaacctagccaca
aagactaaggaggtgggatccatggtgaaggggattgttggggttgaggtgtacacacgt
cacctcactgctgcccaggtcatgctggctaagaagcgtcatgagcgtaaagcacgtagc
ctgcagcagcgtgcattgaatccagtacttgcggagaaaaagaggaagaagaagaatcta
accagcagggaatctaagaaacgcaaaattgctgaaagaaaaggaaagattattaggaaa
aagaaagcaaagttgatagaccgagctgtcgttgcagatagataa
DBGET
integrated database retrieval system
