Penaeus vannamei (Pacific white shrimp): 113816384
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Entry
113816384 CDS
T06111
Symbol
U3-55K
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2 isoform X1
KO
K14793
ribosomal RNA-processing protein 9
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvm03009
]
113816384 (U3-55K)
Ribosome biogenesis [BR:
pvm03009
]
Eukaryotic type
90S particles
Other 90S particles
113816384 (U3-55K)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
Beta-prop_DCAF12
NBCH_WD40
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_1st
PEP5_VPS11_N
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_WDR75_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_Vps41
WD40_like
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_RIG_1st
KNTC1_N
WDR54
WDR93
Motif
Other DBs
NCBI-GeneID:
113816384
NCBI-ProteinID:
XP_027224253
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Position
21:12208952..12217202
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AA seq
463 aa
AA seq
DB search
MPFFIRGKRPHTRVDKKPKRIIKKNGQPPVKRPKVQKDLDEEITSEEDEYVKGKQENFEE
YETAEDLETAQEKKVRLARQYIKELEEQKANDLEAKRVDYDAIGHRLQEDVWEASGKLYK
PVADTIAEADLENILTLKSKQQKLPITCMTLTSDDQFIFCGSKDCSLVKYTIDGKRVATI
PGGRKGTEKVHIGHTRHVYSIAVSSDGMYLASGDQGGYIHIWNAKTMELLKTFKKHRAAI
SGLAFRRGTHTLYSCSHDRMVIVWNIDAMAFVEHLGGHQDAITGIDALHRESCITSGGRD
QSVIVYVIVEDKQLRFSGHQDSIDGVKLLNERTFFTYSQDGTICMWITSKKRPQCVHKAA
HGYQTNGQPHWITAIATLVNSDLLASAGSMDGFIRLWKINTGKQRGLEPILSIPMVGVVN
SLAFTSNGSHLVAGVGREHKLGRWYCIKDSKNSVVVIPLKKKS
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgcctttctttatcagaggaaaaagaccccatacaagagtagataagaaacctaaaaga
atcataaagaaaaatggccagcctccagtcaagagaccaaaggtacagaaggatctggat
gaagaaattacaagcgaggaggatgaatacgtcaagggaaaacaagaaaattttgaggaa
tatgaaacagcagaagacctagagactgctcaggagaagaaagtgagattagcacgacag
tatatcaaagaactcgaagaacagaaagccaatgacctggaagctaaacgtgtcgactat
gatgccattggacatcgtcttcaagaggacgtgtgggaggcatctggcaagttgtataaa
ccagttgccgataccatagctgaagcagacctagaaaatatcctcacccttaaatcaaaa
caacagaagctacccatcacttgtatgactctgacaagtgatgatcagtttatcttctgt
ggatctaaagactgctccttagttaaatataccatagatggcaagagagtagctactata
ccagggggacgaaagggaacagagaaggttcacattggccacacaagacatgtttattcc
atagcagtgtcatctgatggaatgtaccttgcatctggtgaccaaggaggttacatacat
atctggaatgcaaagacgatggagctcctgaaaaccttcaaaaaacatcgtgctgcaatt
tctggactggcctttcgacgaggaactcacaccctttattcttgctctcacgaccgtatg
gtgattgtctggaatattgatgccatggcctttgtagaacacttgggaggccatcaagat
gcaattacaggcatagacgcactgcatagagagtcttgcattaccagtggtgggcgagac
cagtcagtgattgtatatgtcatcgttgaggataagcagctgcgtttttcaggccatcag
gattccatagatggtgtcaagttattaaatgaaagaacattcttcacatacagtcaagat
ggaacaatatgcatgtggatcacgagcaagaagagaccacagtgtgttcacaaagctgca
cacggctaccagaccaacggacagccccactggatcactgccattgccacgttggtcaac
agtgatttacttgcatccgcaggttccatggatggatttatcagactgtggaaaataaac
acgggtaagcagagaggtctggaacccatcctctctatccctatggtaggcgtagttaat
tcactggcttttacaagtaatgggtcacaccttgtagcaggtgtgggtcgggaacacaag
cttggacgttggtactgtataaaagatagcaagaattcagttgttgtaattccactgaaa
aagaagtcataa
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