Penaeus vannamei (Pacific white shrimp): 113816685
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Entry
113816685 CDS
T06111
Symbol
rempA
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pvm03037
]
113816685 (rempA)
Cilium and associated proteins [BR:
pvm03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
113816685 (rempA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR19_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EML
WDR55
ANAPC4_WD40
Beta-prop_RIG_2nd
TPR_GEMI5
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
TPR_COPA_B
TPR_IFT80_172
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
PPR_2
Motif
Other DBs
NCBI-GeneID:
113816685
NCBI-ProteinID:
XP_070000109
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All DBs
Position
31:complement(27024802..27046875)
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AA seq
1482 aa
AA seq
DB search
MSLYFDCIVESPVSNAINTQIAWHPQATCLAVASFSEEKGGAVNVYTGEGKLCDEVDIPP
HPTAQVTSVTWHPSKRILAIGWETGELYLWNDHEHEFHEIQSLHRAPISILCFSAAGARL
VSADASGSLVGWRVDTSGNLQTVFTHELKDPLAQIVFRVTVATQLPSLDINGLARAAVSG
DERALDIFSSWRPRTGHKRLGLGSNTRENLNFFLGSSTGVLYHVSDSGNCVEVLQADGGI
KRLLHHESRNLLVVITEGMVLGQFSVAIDGAVTEINKVKLSGRTNDIQVTWAGTGLLAVS
TGDNNVRLWNLDSGDNYVLSLHGFSYRDQEYMMCLSYSENKKILCGGTNMGSVAMWKYEE
QKLKNNDYSRDPEKDWKLQSPSILSGAVKRVSWGSAQNLLAVDTVRDVYILNEQNMVASY
RDQVCVVQESPTQLSVDVFSADNHLEFRADIQVRGVHNTVDHLLIWNMKKMVIYEITSDA
THLRVVGSFTCEAESAVLHEASIYSIEGANVQVRSIQGTIKQTLSFADNEGEPIGLDVCG
NFLVVATIQGIIKLWDLSRREAKQHTQGKHLSDAIKDFGEVISARCNCSGTRVSIAVAQT
SLLPDPKLYIWDIENDNITYFNFASGRSEDDDNDGTAPPNSAESTSSKYGGGQDRAKRET
AREVGGRFVMSHMWDLEDPRLLVCEAKSLHSKKKQRDNYLAADKEERPAIMLVSLFVSPD
HGAIVQDAFPLTPTYSRLLGVQVPFLYLLNESTVDKKSDTKAKLVTQKVMRDFVGLESCD
KPTKEAMLNFSFYLSMGNMDDAFKAIKTIKSETVWENMARMCVKTKRLDVAALCLGNMGH
ARGARALRQAMKEPQLDARVAMLALQLNMVEEAEQLYRGCGRHDLVNRMYQDGGIWSKAL
ETANENDRIHLRSTHYNYAKHLESKGDFSGAISHYEKSDTHRFEVPRMLFDELPTLEDYI
MHTKDKSLRRWWAQYLESTGEMETALQFYEAARDHLSLVRVYCYCNNLQKAAEIANETGD
RAACYHLARQYENVNMVKEAIHFFTRAQAYGNAIRICKENGYEDQLMNLALVAGPQEQID
AARFFSSSERRQLSKAVMLYHKAGLLSKAVDLAFKSGQVSAVGQIASELDENADPALIQR
CAQYFISNGQYDRAVSLLITGRQYFDALDLCVEHNVWVTEELAEKFTLPKDESARNQILE
KVAECAYAQENYKLATKKFTQAGNKVKAMKCLLKSGDTERIVYFANVCRQREIYVMAANY
LQSLDWRKEPEIMKNIIQFYTRAKATGLLAGFYDACAQVEIDEYQNYEKAAGALSEAYKI
LTNSNDQQSQERLPSVQYKLEKVKQYIGIRRMFPGDGETGIRELQDMLLDPNIEAAVRQG
DIYATMIEFYVSNNNYKSALSSLQDMKNRLPKANPSYYIDAQALQTLARATGINVGEIEN
GVEEGASEDEGNASEEDVVEEEDEEDIRPQRHYALNGSAKFL
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgtattttgactgcatagtagaaagtccagttagtaatgcaatcaacacccag
atagcatggcatcctcaggcaacctgtctcgctgtagcttcctttagcgaagaaaaaggg
ggagcagtcaatgtgtacacaggggagggcaagctatgtgatgaggtggacatcccgccc
catcctacagcccaggtgacatctgtgacctggcatccaagcaagcgcattcttgccatc
ggatgggagacaggagaactctacctctggaatgaccatgagcatgagttccatgaaatt
cagagtttgcaccgcgcacctatatccatactttgcttcagtgcagcgggagccagacta
gtgtcagcagatgcatcaggatctttggtaggatggagagtggacacatcaggcaatctg
cagacagtgtttactcatgagctcaaggacccactggcacagatcgtcttcagggttacc
gtggcaacccaactaccatctctagatatcaatggtcttgcccgggctgctgtgagtgga
gacgaaagagcccttgacatcttcagttcctggaggccgaggactggacacaagcgcctt
gggctgggaagcaataccagggagaatctcaatttctttcttgggtcatccacaggtgta
ttataccatgtcagtgatagcgggaactgtgtggaggttctacaggcagatgggggcatt
aagcgcctcctgcatcatgaatcgcgtaatttgcttgtggttattactgaaggaatggtt
cttgggcagttctctgtggctattgatggagcagttactgaaatcaataaggttaaactg
agtggcaggacaaatgatatccaggtgacatgggctggaacaggactgctggctgtatca
actggagacaacaatgtgcgtctgtggaacctcgactcgggagataattatgtactaagt
ttgcacggtttcagttatcgggaccaagagtacatgatgtgcctcagttattcagaaaac
aaaaaaatattatgtggaggcacaaatatggggagcgtggccatgtggaaatatgaagaa
caaaagctaaaaaacaatgactactcacgagatccggagaaagactggaagctgcaaagc
ccatccatcttatcaggagcagtgaaaagggtttcatggggctcggctcaaaatctgctg
gctgttgacactgtcagagatgtgtacatactcaacgagcagaacatggtagcaagttac
cgtgatcaggtatgtgttgttcaggaatcaccaactcagctgtcagttgatgttttctca
gcagacaaccatttagaattccgtgcagacatacaagtcagaggtgttcacaacaccgtg
gatcacctcttgatatggaatatgaagaaaatggttatatatgaaattacatcagatgct
acacacctaagagttgtaggttcttttacatgtgaagcagagagtgctgtgttacatgaa
gccagcatatattccatagagggtgcaaatgtccaagtacgatctatacagggaacaata
aagcagacactgagtttcgcagataatgaaggggaaccgattggccttgatgtctgtggt
aatttccttgtggtcgccacaatccaagggattatcaagttatgggacttatctagaagg
gaggcaaaacaacacacgcaaggcaaacatttgagtgatgccatcaaggactttggggaa
gttatctcagcaagatgtaactgtagtggtacaagagtctctattgctgtagctcaaacc
tccctgcttcctgatccaaaattatacatctgggatatagagaatgacaatattacgtac
ttcaattttgcgtctggacgatctgaagacgatgataacgatgggacagcacctccaaac
tctgcagagagtacaagttccaagtatggtggaggccaagatagggccaagcgtgagaca
gccagagaagttgggggtcgctttgtgatgtctcacatgtgggaccttgaagatcctcgg
ctacttgtgtgtgaagctaagtcccttcatagcaagaaaaagcaaagagataattacttg
gctgcagataaggaagaaaggcctgcaatcatgttggtgtctctgtttgttagtcctgac
catggggctattgttcaagatgccttccctcttactccaacttactctagacttctcggc
gtgcaagtcccatttctgtatctgctgaatgaaagtactgttgacaaaaagtctgacacg
aaagccaaattagtgacgcaaaaggtaatgcgggactttgtaggcttggagagctgtgat
aagccaacgaaggaagcgatgcttaacttctccttctatctgtcaatgggaaatatggat
gatgcatttaaagctatcaaaacaatcaaaagtgaaacggtatgggaaaacatggctaga
atgtgtgttaaaacaaagcgtttagatgtcgctgccttgtgtcttggcaacatgggtcat
gctcgtggtgctagagctctcaggcaagccatgaaggaacctcagcttgatgcaagagtg
gccatgctggcactgcagctgaatatggtcgaagaggctgagcagctttatcgtgggtgt
ggccgccatgatcttgtgaatcgcatgtaccaagatggtggcatttggtcaaaggctttg
gagacggccaatgagaacgacaggattcacttgagatcgacgcattataattatgccaag
cacttagagagtaaaggagacttcagtggtgccatcagtcactatgagaaatctgatact
cataggtttgaagtaccaaggatgctgttcgatgaactcccaacactagaggattatatc
atgcatactaaagacaagtctttgagaaggtggtgggctcagtatctagaatcaactggc
gaaatggagacggcactgcagttttatgaagctgctcgagatcatctgtccctagtccgt
gtttattgttattgtaataatctacagaaggcagcggaaattgctaatgagacaggagac
agggctgcatgctatcatctagctcgccagtatgagaacgtcaatatggtgaaagaggcc
attcacttctttactcgagctcaggcttatggcaatgctatcagaatctgcaaggagaat
ggttatgaagatcagcttatgaacctggctcttgtggctggacctcaggagcagatcgat
gctgctagatttttctcctcctcggaacgccgacagctctcgaaggcagtcatgctgtac
cacaaagctggtctcttgtccaaagctgttgatctagcctttaagtctgggcaagtcagt
gcagtaggccagattgcatctgaacttgatgaaaatgcggatcctgctcttattcagaga
tgtgcccagtacttcatctccaacgggcagtatgatcgtgcagtgtcactcttgattact
ggcagacagtactttgatgctcttgatttatgtgtggagcacaatgtatgggtgacagaa
gaacttgctgagaagttcaccctgccgaaagatgaatcagctcgtaaccagatcttagaa
aaggtagcagagtgtgcttatgcccaagagaactacaaattggctaccaagaagttcaca
caggctggcaacaaggttaaggcaatgaagtgtctgctgaaatcaggtgacaccgagcgc
attgtttactttgccaatgtgtgtcggcaaagggagatctacgttatggcagcaaattac
ctgcaaagtttggactggcgaaaggagcctgaaattatgaagaacatcattcagttttac
acaagagcgaaagctactggcctgttggcaggattttatgatgcttgtgctcaggttgag
atagacgagtatcagaactatgagaaggctgctggagctctcagtgaagcttataagatc
ctcacgaattcgaatgaccagcaaagccaagaaagactcccatccgtccagtacaagttg
gagaaggtcaagcagtacattggtatcaggagaatgttcccaggggatggtgagacaggt
attagagaacttcaggacatgctgctggaccctaatattgaagctgcagttcgccaagga
gatatttatgctacgatgattgaattttacgtttccaacaacaattacaagtctgctctc
agttcattgcaagatatgaagaacaggttgcctaaggctaaccccagttattacattgat
gcccaagctctccagacgcttgccagagcaacggggattaatgttggagaaatagagaat
ggagttgaagaaggagcaagtgaagatgaaggaaatgcaagcgaggaagatgtggtagag
gaagaagacgaggaagatattagaccacaacgtcattatgccctgaatgggtctgcgaag
ttcctgtaa
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integrated database retrieval system
