Penaeus vannamei (Pacific white shrimp): 113817010
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Entry
113817010 CDS
T06111
Name
(RefSeq) patched domain-containing protein 3
KO
K12385
Niemann-Pick C1 protein
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
pvm04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
113817010
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
113817010
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvm02000
]
113817010
Transporters [BR:
pvm02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
113817010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
ACR_tran
DUF5693
Motif
Other DBs
NCBI-GeneID:
113817010
NCBI-ProteinID:
XP_027224809
LinkDB
All DBs
Position
18:complement(24850006..24866085)
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AA seq
1045 aa
AA seq
DB search
MCSTKEVSPEEESSDVTATPEGTEQTHPAMNGNAEDLSMQAYTNIHAEAIPQADAKRQFS
AGSHDAREFACEVSCTMKTCVREKPSATAVDVGGDGMDAGGNGAPKKKRSALTRLSAYVT
NGMEGAFERHGRRVAANAHTTAALCMVFSALCSLGSFYFVTELRPYSLWLPQDSEFIKVL
NWQSKNFPNTYRRHVAFWEADNILTARAIQEMWRLHVRVADIAVGPNATSWDNLCARVPS
LPTQVESLEEDYADYEYGVLTRRRRDNGHFLDYDMSLSMSREDYCATMDSLPKVCLETSL
LEVWGLDEERILNLTDEQVLEDINSKQISEVFGYGVNFTKYLGSISYDEEGRVVSAGGAI
HVWVTTVDHEAVDRGNIVVDQGNGELVDVNGFAWEDRWVKTVLNDSSRPKDIRAFAQSAS
SFGKVSDENIWGDVKWLVLGFSLMCMFVNMTLGRRNLVQQRPMLAFMGMVSVAQAIAVSY
GLCSLMGIPYCPVNSILPILLIGLGVDDMFVIMAAWESVGRKKGVTMLTERAGVAMRHAG
VAITVTSLTDVTAFAVGATTDLPALRSFCIYAAVGIFAVYILQSTFFLAWLVRDERRMEE
NKNGFFWCITHKDWKPWACSKRDLLGDVFKHGFCPFILSAPMRAIILLGTGALVASSIWS
TMNLRKEFNAKWFIPKTSYLHETFEIAEKHFPDAGQAGYLYFANVSLPEDLPALNEMIKD
LEDTEVIQSIDPWFSALDRYIAQKPELTNSTLDYALLQDTLSIFLQSSSGASYRRDFKVD
GNLDCRAPAPPVTSFRISFMHLPTEGSQEESHALQAVKSVIESVPIKGFKAAWAQAYSVW
ETNEVVGHELWRNMILAAAVVGVVTLILLASFWSAMLVLACVAATVVGVSGTMAIWGLTV
DTVSCIALVLAIGLSVDYAAHISHAFLAIRDVKDRKERARAALEGVGPAVLQGGFSTLLS
FILLAGSSSHVFITFFKVFTAASVLGLYYGLVFLPVILSFVGPEPYADREDDDFVPTTQP
QHDIAYTNDAFTPDPDTESKIVTQF
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcaccaaggaggtcagcccggaggaggagagctctgacgtcaccgctacgccc
gagggaactgaacaaacgcatccggccatgaacggcaacgcggaggatttgagcatgcaa
gcttacacgaacattcacgccgaagcgatcccccaggctgacgcaaagcggcagttcagc
gctggttcgcacgacgccagggagtttgcttgcgaagtcagctgcacgatgaagacctgc
gtgcgagagaagccgtccgccactgccgtcgacgttgggggcgacgggatggatgccggt
ggcaacggcgcccctaagaaaaagaggtccgccctcacgaggctcagcgcgtacgtgacg
aacgggatggaaggcgccttcgagagacacgggcgccgggttgccgcaaacgcccacacc
acggccgccctctgcatggtgttctccgccctctgttccctcggcagtttctacttcgtg
actgaacttcggccgtacagcctgtggcttccgcaggactccgagttcatcaaggtcctg
aactggcaaagcaagaacttcccgaacacgtaccgccgccatgtagccttctgggaggcc
gacaacatcctaacggcacgagcgatccaggagatgtggcgcctccacgtccgcgtcgcc
gacatcgccgtgggccccaacgccacgtcgtgggataacttgtgcgcgcgcgtcccctcc
ctcccgacgcaggtggagtccctggaggaggactacgcggactacgagtacggggtgctc
acgcgtcgacgccgagataacggccacttcctggactacgacatgagcctgagcatgtcg
cgcgaggactactgcgccacgatggacagcttgccgaaggtctgcctcgaaacgagcctc
ctggaggtgtgggggctggacgaggagcgcatcctgaacctcaccgacgagcaggtcctg
gaggacatcaactccaagcagattagcgaggtgttcggctacggcgtcaacttcaccaag
tacctgggcagcatctcgtacgacgaggaaggcagggtcgtctccgcgggcggcgccatc
cacgtgtgggtgaccaccgtcgaccacgaggccgtggaccgtggcaacatcgtagtggac
caagggaatggcgagctggtggacgtcaacggcttcgcctgggaggacaggtgggtcaaa
acggtcctgaacgactcctcgcggccgaaggacatccgcgccttcgcccagtccgccagc
agcttcggcaaagtgagcgacgagaacatctggggcgacgtgaagtggctcgtgctgggc
ttctctctgatgtgcatgttcgtcaacatgactctcggccggaggaacctcgtgcagcaa
aggccaatgctggccttcatgggcatggtgagcgtcgcgcaagccatagcagtgtcctat
gggctgtgttcgttgatgggtattccttactgtcctgtgaattccatcctgcccatcctt
ctcataggactcggtgtggacgacatgttcgtcatcatggcggcgtgggagtcggtgggt
cggaagaagggcgtcacgatgctgacggagcgcgcgggcgtcgccatgcgtcacgccggc
gtcgccatcacggtcacttctctcaccgacgtcaccgctttcgccgtgggagctacgact
gacctgcctgcccttcgctccttctgcatttatgctgctgtggggatatttgctgtatat
atccttcagtctacgttcttcttggcttggctggtacgagacgagaggaggatggaagag
aacaaaaatggattcttttggtgcatcactcacaaggactggaaaccctgggcatgcagc
aagcgcgacctgctcggagacgtattcaagcacggcttctgcccctttattctctcggcc
cccatgagggccatcatcctcctcggcacgggcgccctcgtggcttcctctatctggtcg
actatgaacttgcgcaaagaattcaacgccaagtggttcatccccaagacctcctacctg
cacgaaacctttgaaattgccgaaaaacactttccggatgctggtcaagccgggtatttg
tactttgctaatgtctccttgccagaagatctcccggcactcaacgaaatgataaaagac
ctcgaggatactgaagtgatacagtctatcgacccttggttctcagctctcgaccgatac
atagctcagaaaccagagctaaccaactcgactctagattatgctctgctacaagacacg
ctctcgattttcctccagtcctcttcaggggcctcgtacaggagggactttaaggtagac
gggaatctagactgccgtgctcctgcgccaccggtcacgtccttcaggatatctttcatg
catcttcctacagagggttcccaagaagagtcccatgcactgcaggccgtcaagtcagtc
atcgaatcagtgccaatcaaaggcttcaaggctgcgtgggcacaagcctacagtgtctgg
gagactaacgaggtagtaggacacgagctgtggaggaatatgatactggcagcggcagtg
gtaggtgtggttacactcatcctgctggcgtccttctggtccgcaatgctcgtgctggcg
tgcgtggcagccaccgtggtcggggtttccggcacaatggcgatctgggggctgacggtc
gacacagtgtcctgcattgcgttggtgttggccatcggtctcagcgtcgactacgcagcc
cacatctcccacgcgttcctggcgatccgggacgtcaaggacaggaaggaaagagcgaga
gctgccctcgaaggagtcggcccggctgtcttacaaggaggcttctccacgctcttgtct
ttcatccttcttgccggatcgtcttctcacgtattcataactttcttcaaggtcttcaca
gcagcgtcggtccttggtctttactacggccttgtgttcctccctgtaatcctgtcgttc
gtcggtcctgagccttacgcggacagggaagacgacgacttcgtcccgacgactcaacca
cagcacgacatcgcttatacaaatgatgcctttactcccgatcccgacacagaaagcaaa
atcgttacacagttttaa
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