Penaeus vannamei (Pacific white shrimp): 113817861
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Entry
113817861 CDS
T06111
Symbol
U2af50
Name
(RefSeq) splicing factor U2AF 50 kDa subunit isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113817861 (U2af50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113817861 (U2af50)
Spliceosome [BR:
pvm03041
]
Complex A
U2 snRNP components
U2 related factors
113817861 (U2af50)
Complex B
113817861 (U2af50)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_9
RSRP
DUF4614
Motif
Other DBs
NCBI-GeneID:
113817861
NCBI-ProteinID:
XP_069992021
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Position
21:complement(14042751..14076341)
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AA seq
489 aa
AA seq
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MGEDREEKKPEKEREEKKERGEKDKDRSDKDKDRDRDKDRDRKKRSRSRSRERRKRKSRS
RSRGRSRSRSRSRDRRKSRRKKPSLYWDKPPPGFEHITPIQYKAMQAAGQIPSNVTVPLI
APPSAGTVPVPVPALPEVASVPQTVPVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFN
QQMHLAGLAQAAGNPVLACQVNLDKNFAFLEFRSIDETTQAIAFDGINFKGQSLKIRRPH
DYQPMPGMSEHPTLTMPGTTQIPVIAGVVSTVVPDSPHKIFIGGLPNYLNEDQVKELLMS
FGQLRAFNLVKDSATGLSKGYAFCEYVDVSLTDQVSTNAIHGLNGMQLGDKKLVVQRASV
GAKNANAMAQAPVQIQVPGLQLQSGSGPATEVLCLMNMVTPEELKDDEEYEDIQEDIREE
CSRYGIVRSVEIPRPVEGVEVPGVGKVFVEFNSVLDCQKAQQNLTGRKFANRVVVTSYFD
PDRYHRRDF
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggacagggaggagaagaagcccgagaaagagcgggaggagaagaaggagcga
ggagagaaagataaagataggagtgacaaggacaaagatcgagaccgggacaaggataga
gaccgtaaaaagcgtagcagatccagatcaagggaacgtcgcaagcgcaagtcaagatcc
aggtccaggggtcgatcaaggtcccgctcacgttccagagaccgccgcaagtctcgccgc
aagaagccttcgctgtactgggacaaaccaccaccaggctttgaacacatcacaccaatt
cagtacaaggctatgcaagctgctggccagatcccttccaatgtgaccgtacccttgatt
gcaccacccagtgcagggacagtgccagttcctgtgcctgcattgccagaagttgctagt
gtacctcagacagtgcctgtgcctgtagtgggctcaaccatcactagacaggctcgacgt
ctgtatgtaggcaacattccttttggcgtaactgaagaggaaatgatggaattcttcaac
cagcagatgcacctagctggtcttgcccaggctgcagggaacccagtcttagcctgccag
gttaatctggataagaactttgcattcttggagtttcgatcaattgatgaaactacccaa
gcgattgcttttgatggcattaattttaagggtcagagtttaaaaataagacgacctcat
gattatcagccaatgccaggcatgtcagagcatccgaccctcaccatgccaggtacgaca
cagatcccagttattgcaggtgtggtgtcaacagtggtccccgattcaccccataagatc
tttattggtggtctgcctaattaccttaatgaagaccaggttaaggagctgctaatgtct
tttggacaactgcgagcattcaacctggtcaaggattcggcaactggattgtccaaaggc
tatgcattttgtgagtatgtcgacgtcagcctgacagaccaggtaagcacaaacgctatc
catggactaaatggaatgcaacttggagacaagaagcttgtagtgcaaagggcaagtgtt
ggagcaaagaatgccaatgcaatggctcaggctcctgtacagatccaggttccaggtttg
cagctgcagagtggctcgggccctgcgactgaagtcttgtgcctcatgaacatggtaaca
ccagaggagttgaaggatgatgaagaatatgaagacatccaagaagatattcgtgaagag
tgcagtcgctatggcatagtgcgctcagtggaaatcccaaggcctgttgaaggggttgaa
gtccctggagtgggcaaagtgtttgttgaattcaactctgtgctggactgccagaaggca
caacagaacctcactggccgcaagtttgccaaccgtgttgttgtcacttcatactttgac
ccggatagatatcatcgacgtgacttctaa
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