Penaeus vannamei (Pacific white shrimp): 113818238
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Entry
113818238 CDS
T06111
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 27C isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113818238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113818238
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113818238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
113818238
NCBI-ProteinID:
XP_069997812
LinkDB
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Position
28:5361994..5384527
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AA seq
452 aa
AA seq
DB search
MASSFEVMLLGPDSPVGRRTGGLRAPNIPYEGDEQGKMFVGGLSWETTQESLQRYFGQYG
EVIDCVVMKNSETGRSRGFGFVTFADPNKVDVVLKSGPHELDGRTIDPKACNPRSMQKQK
KNGNWPKVFLGGLPSNLTETDLRNFFSRYGAVMEVVIMFDQEKKKSRGFGFLSFETEEAV
DRAVAEHFVNINGKQKVEIKKAEPRDASKAQEESGQWGTPPDNQWGMPVGPPGIPGLNNG
MGPGNMGPPLGPPLGPHNSQMGGHMGTQGMVQGPYHQGWGTPPQQQGYPPQGYGAPQGPQ
GYQGWGAGQQLQQWGAPNYGSPGGQQYGSFGDPYGRNAPLNALVTGAPGAPSPNLAAAAG
PQPGGKASADYSSWGQYNYNQMSGENSAVAAAAAAFNHGRGYNDGGAQGQAPAHQGAARY
GSESLMGQQAGDPHTNGRPSPSNAQPSSYIQL
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggccagttcttttgaagtgatgttgctgggccctgactcccctgtggggcggcgcacc
ggtggactgagggccccaaatatcccttacgaaggcgatgagcaaggaaaaatgtttgtt
ggtggcctgtcctgggaaacaactcaggagtccttgcagcgttactttggtcagtatgga
gaagttattgactgtgtggtgatgaagaacagtgagacgggaaggtcaaggggttttggc
tttgtgacatttgcagaccccaacaaggtggatgttgtactgaaaagcggtcctcatgag
ctggatgggcgtaccattgatcccaaagcttgcaatcctcgcagcatgcaaaagcagaag
aaaaatggaaattggcccaaggtgtttcttggagggttaccctccaatcttacagagaca
gacctccgcaatttcttctcgcgctatggtgctgttatggaggtcgtcataatgtttgac
caggagaagaagaaatcaagaggctttggatttttgtccttcgaaacggaagaagctgtg
gatagagcggtggcagagcactttgtcaacattaatggaaagcagaaggttgaaattaag
aaagcagagccccgtgatgccagcaaggcacaggaggagagtggtcagtggggcacacca
cccgacaatcagtggggcatgccagttggcccacctggcatacctggcctcaacaatggc
atgggacctggaaacatgggtccaccactgggccctccccttggaccgcacaacagtcaa
atgggaggccacatgggtactcaaggcatggttcaggggccctaccatcaggggtgggga
acaccccctcaacagcagggttaccctcctcaaggatatggtgctccacaaggaccacag
ggctatcagggctggggtgctggccaacagctgcagcagtggggtgctcccaattatgga
tctccaggcgggcagcagtatggcagctttggtgatccctatggccgcaatgctcctcta
aatgcccttgtaactggagctcctggtgccccatcgccaaatctggctgctgctgctggg
cctcagccagggggcaaggcatcagcagactacagttcttggggtcagtacaactacaac
cagatgagtggggaaaactcagcagtagcagcagctgctgcagcattcaatcacggacgt
ggatacaacgatggtggggcacagggacaagcacctgcccaccagggggcagctcggtat
ggtagtgagagcctcatggggcagcaggctggggatccccacaccaacggacggccctca
cctagtaatgctcagccatcctcgtacatccagctatag
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