Penaeus vannamei (Pacific white shrimp): 113818567
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Entry
113818567 CDS
T06111
Symbol
Prp19
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
pvm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113818567 (Prp19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113818567 (Prp19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113818567 (Prp19)
04121 Ubiquitin system [BR:
pvm04121
]
113818567 (Prp19)
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113818567 (Prp19)
Enzymes [BR:
pvm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113818567 (Prp19)
Spliceosome [BR:
pvm03041
]
Complex B
Other components
Prp19 complex
113818567 (Prp19)
Complex C
Prp19-CDC5 complex
113818567 (Prp19)
Ubiquitin system [BR:
pvm04121
]
Ubiquitin ligases (E3)
U-box type E3
113818567 (Prp19)
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
113818567 (Prp19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_EIPR1
PEP5_VPS11_N
U-box
Beta-prop_DCAF4
Beta-prop_IFT122_1st
eIF2A
Beta-prop_WDR35_TULP_N
Ge1_WD40
WD40_like
PROPPIN
ATG16
Cytochrom_D1
PUMA_CC
DUF7099
Motif
Other DBs
NCBI-GeneID:
113818567
NCBI-ProteinID:
XP_027226567
LinkDB
All DBs
Position
2:6539877..6548202
Genome browser
AA seq
505 aa
AA seq
DB search
MSLICAISNEVPDQPVVSPLSGAVFERRLLEKYIAENGTDPINNKELRVEQLIDLKVPTV
AKPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAATRVIARL
NKEVTAAREALATLKPQAGIAPATPAGPTIAATAEAGGAADVPGEGAGLTEDVVARLQDT
ATVLTQERKRRGRTIPEGLTPSEQIRSFNTLASHPGLHSASVPGILALDVHQKDTSKIVT
GGSDKNATVFNKDTEQVVAILKGHSKKVSCVVYHPTEDTVITASPDTQIRVWNVGTAQTL
QLIRAHDGPVTGLSLHATGDYLLSASRDHNWAFSDIRTGRVLCKVSDTSASSPLTAAQFH
PDGLILGTGTQDATIKIWDLKERSNVANFPGHSGAISSIAFSENGYYLATSAEDSTVRLW
DLRKLKNFKTIQLDEGYEVMDLCFDQSGTYLAVAGTDVRVYLCKQWTDLRVFNDHTAMAT
GIRFGSNASYLASTSMDRTLKIYGP
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcatatgcgcaataagtaatgaggtgccagaccagccagtggtatccccactt
tcgggcgctgtctttgagcgccggcttctggagaagtacattgcagaaaatggaacagac
cccatcaataacaaggaactcagagttgaacagctgattgacttaaaagttccaactgtt
gcaaagccaaaacctccaagtgcaactagtattcctgcaatcctcaaagccctgcaggat
gagtgggatgctgttatgcttcactcctttactctgcgtcagcagctgcaaactgctcgc
caagaactcagtcatgccttgtatcagcacgatgctgctactcgtgtcattgcccgtctg
aacaaggaagtaacagctgctcgtgaggccttggcaacactcaagccacaggccggtatt
gcacctgctaccccagctggaccaacaattgctgccacagcagaagcaggaggtgcagca
gatgttccaggagagggtgcagggttaaccgaggatgtggtagctcgcctgcaggacaca
gccaccgttctcacacaagaacgaaagagacgaggccgaacaattccagaggggcttaca
ccatcggaacagatcaggagcttcaatacacttgcatcacatcctggcttgcatagtgct
tcagtaccaggtatcttggctttggatgtgcatcagaaggacaccagcaaaattgtcact
ggtggaagtgacaagaatgcaacagtgtttaacaaggatacagagcaggtggttgctatc
ctaaagggccatagtaagaaggtatcctgtgtggtttatcaccccacagaggatactgtt
atcacagcttctccagatacacagatccgtgtttggaatgtgggaactgctcaaacgctg
caactgatccgagctcacgatggacctgtcactggcttgtctcttcatgcaacaggagat
taccttttgtctgcttcccgtgaccacaactgggccttctcagacatcaggacaggacga
gtgctttgtaaagtaagtgacacatctgctagctcccctctgacagctgcccagttccac
cctgatggtctcattcttggaacgggaactcaagatgccactatcaagatctgggacttg
aaagaacgatctaatgtggccaactttccaggtcacagtggggctattagttctattgcc
ttcagtgagaatggttattacttggcaacttcagctgaggactccactgtgagactctgg
gatttgcgtaagctcaagaacttcaagacaattcagcttgatgaaggttatgaagtgatg
gacttatgctttgatcagtctggcacatacttagctgttgcaggaactgatgttagagta
tacctgtgtaagcaatggacagacttgcgggtcttcaatgatcacactgccatggccact
ggtattcgctttggctcaaatgcaagctatcttgcatctacatcaatggacagaaccctg
aagatctatgggccgtga
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