Penaeus vannamei (Pacific white shrimp): 113819999
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Entry
113819999 CDS
T06111
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvm03016
]
113819999
Enzymes [BR:
pvm01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
113819999
Transfer RNA biogenesis [BR:
pvm03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
113819999
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
113819999
NCBI-ProteinID:
XP_027228047
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Position
18:2921701..2930660
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AA seq
559 aa
AA seq
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MEDIEDLVKDDGEVLVPRNRNAVMPRVRRRKGVLTNKENDEYEGECDSFIPGTQKVYLKT
WGCAHNSSDSEYMAGQLAAYGFKIIEDKQSADVWVLNSCTVKSPAEDHFRNEIKAGREAG
KKVVVAGCVPQGAPQSEFLQGLSVVGVQQIDRVVEVVEETLKGNSVRLMGQKKEHGKKQG
GASLLLPKVRRNPLIEIISINTGCLNQCTYCKTKHARGQLGSYPIEEIVARAKQSFTEGV
CEIWLTSEDTGAYGRDIGVTLPDLLWKLVEVIPEGCRLRLGMTNPPYILDHLEEIAKIMQ
HPRVYAFLHVPVQAASNGVLADMKREYTVEEFCRVVDFLKEKVPGITVATDIICGFPTET
EKDFQETIELCRRYKFPSLFINQFYPRPGTPAAKMQRIPTKEVKNRSRQLTELFQSYRPY
DHKLGEKQTVLVTEEAHDKEHWVGHNKFYEQVLVPKHSDFMGKMVEVEIIETGKHYMKGR
PCEASKPVSPAISEPLPKGKVSGLIENAKDTLDSTQRNQLKEDLAKQERYIILSFVLLIS
ALLVKLAWVCFKMLKDVSM
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggaggacattgaagacctggttaaagatgatggggaagttctggttccccgtaatcgc
aatgctgtaatgccaagagtgcgtcggcgtaaaggagtgctaacaaataaggagaatgat
gaatatgaaggagagtgtgacagctttatcccaggaacacaaaaagtatacctcaagacc
tggggatgtgcacacaacagctcagatagcgagtacatggcaggacaactggctgcatat
ggattcaagatcattgaggataagcagtctgcggatgtctgggttctaaacagttgtact
gttaagagcccggccgaggaccattttcgtaatgagataaaagctggaagagaagctggg
aagaaagtggttgtggctggctgtgttcctcaaggtgccccgcagtcagaattccttcaa
gggctaagtgttgtcggtgttcagcagattgatcgtgttgttgaagtggtggaagaaact
cttaaaggaaactctgtacggctgatgggtcagaagaaagaacatgggaagaagcaaggg
ggagcttctcttcttttgccgaaagtgagaagaaatcctctcattgaaatcatatccatc
aacacgggatgccttaatcagtgcacttactgcaagaccaagcatgcgcggggacagctt
ggatcttacccaattgaggagattgttgctcgagccaaacagtcctttaccgagggtgtg
tgcgagatatggctcacgtccgaagacacaggggcgtatgggagagacattggcgttaca
ctcccagatctattgtggaagcttgttgaggttataccggaaggctgcaggctaagatta
ggcatgacaaacccaccttacatcttagaccatttagaggaaattgccaagattatgcaa
catcctcgagtctatgccttcttgcacgttccagtccaggctgcaagtaatggtgtcctg
gctgacatgaagagagaatacactgtggaggagttttgcagagtggtagattttttgaag
gaaaaagtcccaggtatcacagtagcaacagacataatctgtggctttcctacagaaaca
gagaaagatttccaggagactatagaactgtgtagacgttataagttcccatccttattc
atcaatcagttttatccacggccaggaactccagcggccaagatgcaaagaatacctaca
aaagaggtgaaaaatcgctcaagacagctgacggagttattccagtcgtatagaccatat
gatcataaattgggagaaaagcagactgtcctagtgacggaagaagctcatgataaggaa
cactgggtcggacacaataagttttacgagcaggtactagtgcccaaacacagtgacttc
atgggtaaaatggttgaagttgagatcattgaaactggcaaacactacatgaaggggcgg
ccttgtgaagcatcgaaacctgtatctccagccatatcggaacctctaccaaagggcaag
gtgtcgggtttaattgaaaatgcaaaagacaccctcgacagtacccagaggaatcagctg
aaggaagatcttgctaagcaggagagatatatcatactgagctttgtacttcttatttca
gcacttctagtcaaacttgcatgggtgtgtttcaaaatgttaaaggatgtttctatgtga
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