Penaeus vannamei (Pacific white shrimp): 113820086
Help
Entry
113820086 CDS
T06111
Symbol
me31B
Name
(RefSeq) ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113820086 (me31B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113820086 (me31B)
03036 Chromosome and associated proteins [BR:
pvm03036
]
113820086 (me31B)
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113820086 (me31B)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113820086 (me31B)
mRNA degradation factors
5'-3' decay
Decapping complex
113820086 (me31B)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113820086 (me31B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
DUF4827
Motif
Other DBs
NCBI-GeneID:
113820086
NCBI-ProteinID:
XP_027228145
LinkDB
All DBs
Position
11:complement(515153..530533)
Genome browser
AA seq
443 aa
AA seq
DB search
MADMATLPNHASPVKPIINNQVVKATDDRSWKAQIQVPPKDRRKRTSDVTDTKGNEFEDF
CLKRDLLMGIFEKGWERPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPLLEQIDPT
QNHIQAMVIVPTRELALQTSHICNELAKHIGVKVMVTTGGTNLKDDIMRIYEVVHAVIAT
PGRILDLMEKKVAVMDKCKMLVLDEADKLLSQDFKGMLDRVISYLPAERQILLYSATFPL
TVEQFMKKHLRSPYEINLMDELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCN
STQRVELLAKKITDLGYSCYYIHAKMAQAHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQA
VNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIEQELGTEIKPIPK
VIDPALYVAEHHLEEDDEGNISK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggctgacatggccacacttcctaatcatgcttctccagtcaaacccatcatcaataat
caggttgtcaaggcaaccgatgacagatcgtggaaggcacagattcaagttcccccaaag
gacagaaggaaacgtacctcagatgtcacagacacaaaaggcaatgaatttgaagatttc
tgtttgaaaagagacctgttaatgggtatatttgagaaaggttgggagcgaccatcaccc
atccaggaggcatccatccctgtagcacttagtggaagagatattttggcaagagcaaag
aatggaactggaaagacgggggcttattcgattcccctcctagagcagattgatccaact
caaaaccacattcaagccatggtcattgtaccaactcgagagctggcactgcagactagt
cacatttgtaatgagttggcaaaacatattggagttaaggtcatggtgacaacaggtggt
accaatcttaaggatgacattatgagaatttatgaagttgtgcatgcagtcattgccact
cctggtaggatccttgatcttatggagaaaaaagtagctgtgatggataagtgcaagatg
ttggtgttagatgaggctgataaactgctgtcacaagacttcaagggcatgttggaccgt
gtcatttcctacctgccagctgaacgacagattcttctgtactcggcaacatttccacta
acagttgaacaattcatgaagaaacacctaagatcaccatacgagatcaatttgatggac
gaactaaccttaaagggggtgacgcaatactatgcctttgtccaagaaaggcagaaggtc
cactgtttaaatactttgttctcaaagctacaaatcaaccaaagtataatcttctgcaac
tcaacccaacgagtcgagcttttggccaagaagatcactgatctggggtattcttgctac
tatatacatgccaaaatggctcaggctcatcgtaatcgagttttccatgacttccgcgca
ggcttgtgcaggaatttagtttgttctgacttgtttaccagaggtatagacatccaagca
gtgaatgttgtgataaattttgacttcccaaagatggccgagacctatctccataggatt
ggtaggtctggacgatttggccacctaggtattgcaatcaacctgattacttatgatgat
cgatttgcactgcaccgtattgagcaggaattgggaacggagattaagcctatacccaag
gtcattgatcctgcactgtatgtggcagaacatcaccttgaagaagatgatgaaggaaac
attagcaagtaa
DBGET
integrated database retrieval system
