Penaeus vannamei (Pacific white shrimp): 113820244
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Entry
113820244 CDS
T06111
Symbol
Rrp6
Name
(RefSeq) exosome complex component 10 homolog
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113820244 (Rrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113820244 (Rrp6)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113820244 (Rrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
113820244
NCBI-ProteinID:
XP_069974353
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All DBs
Position
41:complement(22811056..22821771)
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AA seq
858 aa
AA seq
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MKEGDESDQEAFLRNRSLDEYVKTVMTHIRGCQKLSLELQGWHHYSDYVGVRNTIQEVNT
RITNLITNIFQHQDIKLKLTHTKLLDQFDMVREGNDALLERINSDIDEASGLKKDTDFEP
SVKVVQAPSSANTPSKNVVLMASRNVQKPQLFFKEKVDNSKKEPFIPMITEKPNSLKPLS
ILICLDGTQEYYSHPYEYELNHWMPDPAQLEKVKPRRPRPLGQTSLTMVTEVQQLEALVK
ELKTCSEIAVDLEHHAFRSYQGLTCLIQVSTRTKDYLIDPLALRGQLTILNEVFTNPKIT
KVLHGADFDILWLQRDCGVYVVNMFDTHQAAIVLEYPHRSLAALLSKFCDIQANKVYQRA
DWRIRPLPEDFMEYARQDSHYLLYVYDLMRNELIERGNQLNNLITAVYSRSVDICLKRYE
KPFIGPESHMELYRRSRRTFDTKQMYALRELYLWRDNVAREQDESPDYVLPKHMLLQIAE
VLPKEMQGVLACCNPIPPLVKTELLTIHTIIRAAREQKLLPVLEQSVEQQIPQVQLQMEE
LNTGLVISKHDLSTVDENPTDLPTLLNPRETLLGDLFSQPRVDVRVKLKSRMFGCVMSHL
KHKDSLHREITKEFMSPYERYTAYQDLKPHLDGERKKREEPVDEAHIARVKEHFLCLSNN
TPQEKSEAEEANVVIKQKRPRPSKEKKKSEMNTPIVLGDEIKEMKAMNSGQKRAVDNEGE
AVNGENDESPSKKLKTNKADGDTKEGGKEKKDYRKVEDEEEKQEDDGREKGEEEEEEEGA
YMESGEEEEEKSAAGSAPFDYDKADYSIFEGKPGKKFKSKQKYQQKFGGKGQRGRGFKSN
MKSFSFGRGNTSRGGSRR
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaggagacgaatcagaccaagaggcctttttaaggaacagatcattagacgaa
tatgttaagacggtaatgacacatatccgagggtgccagaagttgagcttggagcttcag
ggatggcaccattacagcgactatgttggggtccgaaacaccatacaggaggtcaacacg
aggattacaaacttgattaccaatatcttccaacaccaagacatcaaattgaaactgact
cacacaaaattgttagaccagttcgacatggtgagagaagggaacgacgccctgctcgaa
agaatcaattcagacattgatgaggcatctgggctgaagaaagacactgattttgaacca
tcagtcaaagtagtacaggcaccgtcgtcagccaatacacccagcaagaatgtcgtcctc
atggcctcacggaatgtccagaaaccacagctgttcttcaaggaaaaagtggacaactca
aagaaagaaccctttattcctatgatcaccgagaaacccaattccctcaagccgttgtcg
attcttatttgcttggacggaactcaggaatattacagccacccatacgagtacgagcta
aaccactggatgcccgatccagcacagctcgagaaggtgaagccaagacgccccagaccc
cttgggcagacttcccttaccatggtgacggaggtgcagcagctggaggctctagtcaag
gagctgaaaacctgctctgagatcgcggtcgatttggagcaccacgccttccggtcctac
cagggactcacctgtcttatccaggtgtcaacgaggacaaaggactacctcattgaccct
ttagctctccgaggccagctcaccatcctcaatgaggtgttcaccaatcccaaaattact
aaggtacttcatggtgcagactttgacatcctgtggctccagagggactgcggtgtttat
gttgtcaacatgttcgacacgcatcaggcagccatagtcctggaatatccacaccgttct
ttggctgcattactctccaagttctgcgacattcaggcaaacaaggtttaccaacgagct
gattggagaataaggccccttcctgaggattttatggaatatgcacggcaagattctcac
taccttctctacgtgtatgatctcatgcggaatgagttgatcgaacgaggaaaccagctg
aataacttgatcacagctgtctacagcagatcagtagacatatgtttaaaacgctatgag
aagccattcattggaccagaaagtcacatggaattataccgtcgaagccgcagaaccttt
gacacaaagcagatgtatgcactgagggaactgtacctttggagagacaatgttgctcga
gaacaagatgaaagtccagattatgttttgccaaagcatatgttgctgcagattgccgag
gtgctgcccaaggagatgcagggagtgctggcctgctgcaaccccattccaccccttgtc
aagacggagctgctcacaatccataccatcatcagagcggccagggaacagaagctcctg
ccggtcctcgagcaatccgtagagcagcagattccacaagtccagttacagatggaggag
ctgaacacaggtctggtgatcagcaagcatgacctctcgacagtggatgaaaatccgact
gacctgccgaccctactgaatcccagggagaccttgctcggtgatcttttttcacagccg
agggtagacgtcagagtgaagttgaagtccaggatgttcggctgcgtgatgagccattta
aaacacaaggacagcttgcacagggaaataacaaaggagttcatgagtccatatgagaga
tacacagcctaccaggacctaaagcctcacttagacggagagcggaagaagcgagaggag
cctgtcgacgaggcacacattgcacgggtcaaagagcatttcctatgcctaagcaacaac
acgccacaagagaaatcagaggcggaggaggcaaatgttgtcataaagcagaaaaggccc
cgaccgtcgaaagaaaagaaaaagtcggaaatgaataccccaatagtcttaggggacgag
atcaaagaaatgaaagcgatgaacagcggacagaaacgtgcagtggataacgaaggggaa
gcagtgaacggcgagaatgacgagtcgccaagcaagaagctgaagacaaacaaggcagat
ggagacacgaaagaaggagggaaggaaaagaaagattacagaaaggtggaggacgaggag
gagaagcaggaagatgacggaagggaaaagggggaagaggaggaggaggaggaaggagca
tatatggagtcaggggaggaggaagaggagaaatcagcagcagggagcgcaccctttgac
tacgataaggctgattacagcatttttgagggcaagccgggcaagaagttcaaatccaag
cagaagtaccagcagaagtttggtgggaagggccaaaggggcagaggcttcaagtcgaac
atgaagagcttttcttttggaagagggaatacaagcaggggtggctcgcgtcgatga
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