Penaeus vannamei (Pacific white shrimp): 113820707
Help
Entry
113820707 CDS
T06111
Name
(RefSeq) NPC intracellular cholesterol transporter 1 homolog 1b isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
pvm04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
113820707
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
113820707
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvm02000
]
113820707
Transporters [BR:
pvm02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
113820707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
ACR_tran
MMPL
NPC1_MLD
LtfC
Motif
Other DBs
NCBI-GeneID:
113820707
NCBI-ProteinID:
XP_069969767
LinkDB
All DBs
Position
3:complement(45634475..45656703)
Genome browser
AA seq
940 aa
AA seq
DB search
MGGTSGNCLTKVSSAVAGALEKFFYTYGKSVASHPKKYILGCVLLTAACCLGFANFYMEN
RPEKLWIPQDSDYVLTLNWQAENFPNDQRVELILYESDNILKADYIREMYRLRKALRSIV
VQNRDGENVTQADLCFEVPALGGTQKDELRDIKRKLFPDRDPDEDFDWSLAFDKTIYYQF
YEKMPKDCLEFSILEIWGNNDTAIEELTDEEVLREINTANMSVTYAYPMDFQAFLGGIER
DESGQVIGAKTTLTQIVMRINRTEIDLGMLTNDAGLADEVDMALYDWEGEFISLLRNDTG
RPEGLEVYLQAQRSFGEISGETILGDVAFLVIGDIILFVYVQLMLGKFNMVETRPVLSLL
GLLATFMAVGVSFGLCSAFGIAYGPVHSILPLLMLGLGVDDMFVIVQCWQNLSHEEKRLE
LKKRMGCALRHAGVAITVTSLTDFAAFTIGASTVLPALRSFCIYSALGVVALYMLQATFF
VAWFALDQTRLEDHRNGLFWCYKHKNWTPNKCSQYDLCQMFFDKIYSKYLLKKPVKALVL
VVTAVVFGTSIWGVTNLRQEFNPVWFIPQSSYLFQFLSRAQTFYPEAGERGTVYLGALNY
SQELPKIGYLTQAMRENEYISFVDSWYDLMIDYTNKSTGEDITGQPLNESFFNKAMSEFL
YSPSGSRFQNYFHFDGNLTAMEPAPPILASKFDYSHRSLDGPSEQIPAMDQTKDLVKSAN
FSDFAAPIAMMYSSWETDKIIAFELVRNLSLALVAVFVMTLILIANIVSSIYVLLCVLLT
LVDVMALMTWWDLTIDTVSCINLVLCIGLCVDYSVHIALHFMQVKGTRDERVQRTVKEMG
PAVINGAFSTFLAFILLANSDSHVFESFFKIFFGVFIYGVFHGLVFLPVLLSLIGPAPYA
HDLHALPEAIEVEKRSKDVLVIDGRTYSQVHNVRSNSSYE
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaacgtcagggaactgtctgacgaaggtgagcagcgccgtcgcgggagcactc
gagaagttcttctacacatacggcaagagcgtggcttcgcaccccaaaaagtacatactg
ggatgtgtcctgctcaccgctgcctgctgtctcgggtttgcgaacttctacatggagaat
cgccctgagaaactgtggattccgcaggactcagactatgtgctgaccttgaactggcag
gctgagaacttccccaacgaccagcgagtggaacttatcctatacgaatcagataatatt
ctcaaagctgattacattcgagagatgtatcgactgagaaaggctctaagatccatcgtt
gtgcaaaacagagacggcgaaaatgttacccaggcagatctatgctttgaagtgccagcc
ctcggaggaacccaaaaggacgaactgagagacatcaagcgcaagctcttcccggatcga
gaccccgacgaggacttcgactggtctctggccttcgacaagaccatctactaccagttc
tacgagaagatgcccaaggactgccttgagttcagcatcctcgagatctgggggaataac
gacacggccatcgaagagctcacggacgaggaagtgctgcgtgagatcaacacggcgaat
atgagcgtaacgtacgcataccccatggattttcaagctttcctaggaggaatagagaga
gacgaatctgggcaggtgatcggcgctaaaaccacactgactcagatcgtcatgagaatc
aaccggacagagattgacttggggatgttaacgaacgacgctggactggcggatgaggtg
gacatggcattatatgactgggagggcgagttcatctcccttcttcggaacgacacagga
cggccggagggactcgaggtatacttgcaggcgcaaagaagcttcggcgaaatcagtgga
gaaacaatactgggagacgttgccttcttggtcataggagacattatattgttcgtgtac
gtgcaactgatgctgggcaagttcaatatggtcgagactaggcccgtcctctccttacta
ggactcctggctaccttcatggccgtcggggtgtccttcggcctctgctccgccttcggg
atcgcttacggtcctgtgcactccatcctgcccttgcttatgctgggtttgggagtggat
gacatgtttgttattgtccagtgctggcagaatctcagccatgaggaaaagagactagag
ctaaagaagagaatgggttgtgcgcttcgtcacgccggggtggccattacagttacctcg
ctcacggacttcgcggctttcacgatcggcgcctcgaccgtcctcccagccctccggtcc
ttctgcatctactccgccctgggtgtggtcgcgctgtacatgctccaagccaccttcttc
gtcgcgtggttcgccctcgaccagacccgcctcgaagaccaccgcaacgggctcttctgg
tgctacaaacacaagaactggactcctaacaaatgttctcagtacgacctgtgtcagatg
ttcttcgataagatctactccaagtacctgctgaagaaacctgttaaggctctcgtgctg
gtcgtcacggctgtcgtattcggcaccagcatctggggcgtcacgaacctgaggcaggaa
ttcaaccccgtgtggttcattccgcagtcgtcctacctgttccagttcctctctcgggcc
cagactttctacccagaagcaggcgagcgcggcaccgtgtatctgggcgccctgaactac
tcccaagaactgccgaagattggctacctgacgcaggccatgagggagaacgagtacatt
tccttcgtggattcttggtatgatctcatgattgactataccaacaagagcaccggtgaa
gacatcacaggacagccactgaacgagagcttcttcaacaaggccatgtcagaattcctg
tactcgccatcaggctctcgcttccaaaactattttcatttcgacggcaacttaaccgct
atggaacctgcgcctcccattctcgccagcaaattcgactacagccacagatcccttgac
gggccatctgagcagattccggcgatggaccagacgaaggacttggtcaagagcgcgaat
ttctcagatttcgcagccccaatcgccatgatgtacagcagttgggagacggataaaatc
atcgcatttgaacttgtccgaaacctttctctggcgctggtggccgtgttcgtcatgacg
ctcatcctcatagccaacatagtgtcttcaatctatgttctcttgtgtgttttgcttacc
ctcgtcgatgtcatggccctgatgacctggtgggacctgactattgacaccgtgtcttgc
atcaacctggttctctgcattggcctctgtgttgactactcggtgcacatagcactgcac
ttcatgcaggttaaaggcacgagagacgaacgtgttcaacggacggtgaaagagatgggt
ccggcagttataaacggagccttctctacgttcctggcgttcatcctcctcgctaattcg
gattctcacgtgtttgaatcgtttttcaagatcttcttcggcgtgttcatctacggggtg
ttccatggcctggtcttcctccccgtcctcctcagcctcattggaccagcgccctacgcc
cacgacctccacgcccttcccgaagccatcgaggtcgagaagcgctccaaggacgttctg
gtgatcgatggcaggacttactcgcaggtgcacaacgttaggtccaattcgtcctacgag
tga
DBGET
integrated database retrieval system
