Penaeus vannamei (Pacific white shrimp): 113820839
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Entry
113820839 CDS
T06111
Symbol
spel1
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113820839 (spel1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113820839 (spel1)
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113820839 (spel1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
113820839
NCBI-ProteinID:
XP_027229017
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All DBs
Position
10:39540866..39550648
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AA seq
928 aa
AA seq
DB search
MANVQPKEQLVLDGAHEQGFLAFYKGLPEKPNTTVRLFDRGEYYTVHGQDAVLAARELFR
TNSVIKHLGGGSNKLESVVLSRLNFESFVRDLLLLKHYRVELYKQKSSSKNDWEAEYKAS
PGNLSQFEEILFGANNELTVTTGVIGVKLASESGHRVVGVGYIDANGRQMCVAEFNDNDT
FSNLEALVVQLSPRECLIPSGDLGPDGAKLKQVLSRSQLLVTERKRTEFTNKDASQDLSR
LLRTKGDASAVAARPEMDRTNAICALASVIKYLELLGDDSNFAQYTLSMYDLSQYMRLDS
AAVRALHVEPITGSVESSGGVSKTHTLLGLLDKCRTPLGHRLLAQWLRQPLVDINKIEER
LDLVEAMVCTVEMRHSLGEEHLRRVPDLNRMARKLSRKAATLQDCYRLYQCIERLPYLCE
AIAKYDGPHTASLAAVFTTPLQELISDLAKYQEMIETTVDMEQANQGEYVIKPDFDETLA
ELRETMNGLEKDIQNQLRKAANDLCLEAGKSIKLESNAQLGFYFRVTLKEEKVLRNNRSY
HMIDTNKAGVRFRNNALQDLNEQHMASKEEYAQQQKTVVEEIMNIAVGYVEVMQNLGQVL
ATLDCIFALATAAVSAPIPYVRPKLLEQGSGVIKLQEIRHPCLELQDDVSFIPNDCTFDK
GNGLFHIITGPNMGGKSTYLRSVGAAVLMAQIGSFVACQEAEISIVDSILARVGAGDCQL
KGVSTFMAEMLETATILRSASNKSLIIIDELGRGTSTYDGFGLAWAISEHIAKEIAAFCL
FATHFHELTALADEVDTVQNYHVTATTAHGALTLLYQVRAGPCDRSFGIHVAELANFPSS
VIEHAKRKAGELEDDFGNDDDDSEEAVKKRKLEKQEGEKLIEEFLSKAASLDIDNMNEQD
LETEINKLRNEVKGKNNAYVSRLLSRET
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgttcagccgaaagagcagctcgtcctagatggcgcccacgagcagggattc
ctcgccttttataagggtctcccggagaaaccaaacaccactgtccggctgtttgaccgt
ggggagtactacacagtccatggacaagatgcagtgctggcagcaagggagcttttccgc
actaattctgtcatcaagcacctaggtggaggaagtaataaattggagtcagtggtttta
agtcgcctgaattttgaatcttttgtgcgtgatctcctcttgttgaagcattatagagtg
gaactctataagcagaagtcatcaagtaagaatgactgggaagcagaatataaggcatct
ccaggaaatctttcacagtttgaagagattctttttggtgcaaataatgaactcacagtc
acaacaggtgtcattggagtcaagctagcaagtgaaagtggccatagggttgtgggtgtg
ggttacattgatgccaatggacgccagatgtgcgttgcagagttcaatgacaatgataca
ttcagcaacctggaggcccttgtggtgcagcttagcccaagagaatgcctcatcccctca
ggtgatctgggacccgatggagctaaactgaaacaggtgttatctcgcagccaactcctt
gttactgaaagaaagagaacagaattcaccaacaaggatgcaagtcaagaccttagtcgg
cttctgcgcactaagggagatgcatcagctgttgctgcaagaccagaaatggaccgtaca
aatgctatttgtgcactagcatctgtcataaaatatttagagcttctgggtgatgatagt
aactttgcccagtatactctgtctatgtatgacctcagccagtacatgcgtcttgacagt
gcagcagttagggcattacatgtagagcctatcactggtagtgttgagtcttctggcggt
gtgtctaagactcatactctccttgggctcttagacaagtgcagaactcctcttggacat
cgtttactggcacagtggcttagacagcctttagttgacattaataaaattgaagagaga
ttagatttagtggaggctatggtatgcactgtagagatgcgtcacagtcttggtgaagaa
cacttgcgtcgtgtgcctgacctcaaccgcatggctcgcaagctaagtcgaaaggcagcc
actctacaagactgttacagactctaccagtgcattgagaggctaccatacctgtgtgaa
gcaattgccaagtatgatggacctcacacagcttcactagcagcagtcttcacaactcct
cttcaggagctaatatcagacttagcaaagtatcaggaaatgattgaaacgacagttgac
atggaacaagcaaatcagggagaatatgttatcaaacctgactttgatgagacactagca
gaattaagagaaaccatgaatggattagaaaaggatatccagaaccagttgaggaaggca
gccaacgacctctgtctcgaagcagggaagagcataaagctggagtccaatgcacagctt
ggcttttacttcagagtgacattaaaggaagagaaagtactccggaataatcgaagctac
catatgattgatacaaacaaagcaggtgtgagatttagaaataatgcccttcaggacttg
aacgaacagcatatggcatcaaaggaagaatatgcacagcagcaaaaaacggttgttgaa
gaaattatgaatatcgcagttggctatgtggaagtaatgcaaaacttgggacaggtgctt
gcaacattagactgcatttttgcccttgcaactgcagcagtctctgcacccattccctat
gtacggccaaaacttttggaacaaggatcaggtgtcataaagttgcaggagatccgtcat
ccttgcttggagcttcaggatgatgtttcatttattccaaatgattgcacatttgacaaa
ggtaatggattgttccatatcatcactggacccaacatgggaggtaaaagcacgtatcta
cgctctgtgggtgctgcagtcttaatggctcagattgggtcttttgttgcttgtcaggaa
gcagaaatctccattgtagacagtattcttgctcgggttggtgcaggagattgtcagctt
aagggtgtgtcaacatttatggcagagatgcttgagaccgcaactattttaagatctgct
agcaacaaatcactgatcatcattgatgaactgggacgtggtacatcaacttatgatggc
tttgggctagcatgggctatatcagagcatattgcaaaggagattgcagcattctgcctc
tttgctacacatttccacgagctcacagctttggcagatgaagtggacactgttcagaat
taccatgtgacagccacaactgcacatggtgccttaacacttttgtaccaggtaagagct
ggaccttgcgatcgtagttttggaatccatgttgcagagctcgccaacttcccatcaagt
gtgattgagcatgctaaaagaaaagctggggaactagaagatgactttggcaatgatgat
gatgattcagaggaagcagtcaaaaagaggaaattggagaaacaagaaggggaaaagctg
attgaggagttcctctccaaggcggcctcactagatattgataatatgaatgagcaagac
cttgagacagagatcaacaaattacgcaatgaagtcaagggaaaaaacaatgcctatgta
tcccggttgctgtcacgggagacataa
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