Penaeus vannamei (Pacific white shrimp): 113820943
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Entry
113820943 CDS
T06111
Name
(RefSeq) U3 small nucleolar RNA-associated protein 15 homolog
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113820943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvm03009
]
113820943
Ribosome biogenesis [BR:
pvm03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
113820943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_RFWD3
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_SPT8
KNTC1_N
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_Nup120_160
WDR54
PQQ_2
Motif
Other DBs
NCBI-GeneID:
113820943
NCBI-ProteinID:
XP_027229143
LinkDB
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Position
10:18729425..18742880
Genome browser
AA seq
543 aa
AA seq
DB search
MATFKKTHTRAFNKTGIKATPDLGYWKKLEFPVTVKEFTSIDYVDVSPTEPYYIAVTSGP
KVDVYHQQTTQVWRTISRFQRNAYGARFRQDGQLLVAGTEEGQVKLFNQRQKQLLRVFKG
HSSATHRVSFVEGMPHIVSFSDDQTAALWDIGDESQICTLKGHTDFIRAGITSPASENII
LSGSYDHTVRLWDTRTGSSVLTVDHGAPVESILCYPSGGVFISAGGTEVRVWDTISGRLL
SKLSQHHKTVTCLAFASDNNRLMSGSLDCHIKIYDVNTYSVVHTLDFPAPILSMAVAPED
SMLAVGMISGGSGLVSFQHRREQQEVEKESNRAKKKAADIRNMITEDYRVVPDEHIIKHE
EKEHLAKHDVFLRKFKYSQALDSVLTSYVTGKTPNVTVGVLRELIRRDGLKTAIAGREVK
QLTPLLNFVIRFVRNPLYKQLLIDVSNVIIDLYSDSLYENPTLVRQFRRLQDEIDAELRI
SREYIGLMGAIEMFLSASEPERAPSTINPQHLASTSMYENESSASLLRSSAKKSAAAVVV
DVV
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgttcaagaaaacccatacacgtgcctttaataagacaggaattaaggccaca
ccagaccttggatattggaagaaattagagtttccagtgacagtcaaggaatttacatca
atagactatgtagatgtgagtccaacagaaccatattatatagccgtaacatctggacca
aaggtagatgtgtaccaccaacagacaacacaagtttggcgcacgatctcaagatttcag
cgcaatgcctacggtgctaggtttcggcaggacggtcagctcctggtggcgggaacggaa
gaaggacaagtcaagctcttcaaccaaagacaaaaacagcttcttcgagtgttcaaaggt
catagcagtgcaacacaccgggttagcttcgtggaaggaatgccacacattgtctccttc
tcagatgaccagacagcagctttatgggacataggggatgagagccaaatttgtacacta
aaaggacacacagatttcatccgtgcaggaatcactagtccagcatctgaaaacatcatc
ctaagtggatcctatgatcacactgtgcggttatgggatacgcgcacaggctccagtgta
ctcacagttgaccatggggctcctgtggagagcattttgtgttatccctctggcggagtc
ttcatctcggcaggtggtactgaagtgagagtatgggataccataagtggtcggttgcta
tccaaactgtcacagcatcacaagacagttacgtgccttgcctttgccagcgacaacaac
agactcatgtcaggttccctagactgccatatcaagatctatgatgtcaacacatattcg
gttgttcacaccttagattttcctgccccgattctcagtatggcagtggcgccagaggac
tccatgctggctgtgggtatgatctctggtggctcaggactcgtgtcattccaacatcga
agggaacagcaggaagtggagaaggagagcaacagggccaaaaagaaagccgcagatatt
cgaaacatgatcacagaggactacagagtggtgccagatgaacatattatcaaacatgag
gaaaaggaacaccttgccaaacatgatgtctttttgagaaagttcaagtacagccaagcc
ctagattctgtattgacgtcctatgtaacaggcaagactccaaatgtcactgttggagtt
ctgcgtgagttgataagacgagacggactcaagacagcgatagcaggaagagaggtgaaa
cagttgactccgctgctgaattttgtgatcagatttgttcggaatccgttgtacaagcaa
ctactaattgatgtctccaatgtgattatagatttatacagtgacagtctctatgaaaat
ccaacattagtgaggcagttcaggagactgcaagatgagattgatgctgaactccgcatc
agcagagaatatattgggctcatgggtgctattgagatgttcctttcggcatcagaacct
gagagagcaccttcgaccattaatccacagcacttggcttcaacgtcaatgtatgaaaat
gaaagtagtgccagcctcctccgatcatcagctaagaaatcagctgctgcggttgttgtg
gatgttgtgtaa
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