Penaeus vannamei (Pacific white shrimp): 113821271
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Entry
113821271 CDS
T06111
Name
(RefSeq) transcriptional repressor CTCF isoform X2
KO
K23195
transcriptional repressor CTCF
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvm03000
]
113821271
03036 Chromosome and associated proteins [BR:
pvm03036
]
113821271
Transcription factors [BR:
pvm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113821271
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113821271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-met
zf-H2C2_5
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-C2H2_15
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
113821271
NCBI-ProteinID:
XP_027229565
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All DBs
Position
24:5045961..5060383
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AA seq
683 aa
AA seq
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MEGSQAGETISDIHNYLDTFNKEIQTGDQATSGDVAQVFVDESGQYFYQNVDGSQQQMVV
VSSEGADGSEGDVGAGGADGSVMLHTEEDSLHEDGDSLSQSQVALGEDGTLQVISGMDQS
ETSNQVVLNTGDNNQIVTIVPSSTNPGEVSYVLIVEQSGENDKDDTVYDFNEADEGLSYE
SGEEDDKKMMRIIHKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERG
FKTLASLQNHVNTHTGIKPHRCKFCESTFTTSGELVRHVRYIHTHEKPHKCPDCDYASVE
LSKLKRHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECEICHARFTQSNSL
KAHKLIHTGNKPVYACELCPTTCGRKTDLRIHVQKLHTSDKPLKCKKCGKAFPDRYTFKQ
HNKSHEGEKCFKCDLCPYASTSAKHLESHMLVHTEQKPYQCDQCDQAFRQKQLLKRHQNL
YHNPAYIPPMPREKTQECPECGKAFRHKGNLIRHMAIHDPDASAQEKAQALKIGRQKRLQ
LINGQQVEVYTGEVDEDEIMAVEGQDGNQYVVLEVIQLQDGEGHVMMSDGIPVTDSSLDG
AGVASVLGSSPLMVPETITGDTIGPIDGTCLVSDPSLLELQQKKSELKTEISAEAKKEAQ
KEMETCFGFDDEDEGQIHLEFDE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggggagccaggcgggagagacaataagtgatattcacaactacctggacaccttc
aataaagaaatacaaaccggtgaccaggcaacctcaggtgatgtagctcaggttttcgtt
gatgaatcaggccagtacttctatcagaatgttgacggcagccagcaacagatggtggtg
gtgtcctctgagggcgcagatggttcagaaggagacgttggggccggaggggcagatggc
tccgttatgcttcatacagaggaagactcgctgcatgaggatggcgacagcttatcccag
agtcaggtggcccttggggaggatggtaccctacaggtaatatccgggatggatcagagt
gaaacgagcaaccaggttgtacttaatacaggtgacaacaatcagattgttacaattgtc
ccatccagcacaaatcctggagaagtcagttatgttctcattgtggaacaatctggagaa
aatgacaaagacgacactgtatatgatttcaatgaagctgatgaaggtcttagttatgaa
tccggtgaggaggacgataaaaagatgatgcggataatacacaaaaagtctcaaactgtt
actcaggcccatatgtgcaactattgtaattataccagcccaaagagatatctcctatca
cgacacatgaaatcacacagcgaagagaggccacacaagtgttctgtttgtgaaagagga
tttaaaaccttagcctctctacagaaccatgtaaatacacacacaggcattaaaccccac
cgttgcaaattttgtgaaagcacgttcaccacctcaggtgagcttgtgcggcatgtgcga
tacattcatacccatgagaaacctcacaaatgcccggactgcgattatgcaagtgtagag
ttgagcaaactaaaacggcacatgagatgccacacaggggaacggccatatcaatgtcca
cactgcacatacgctagtcctgacactttcaaactcaagcgccacttgcgcattcacact
ggagagaagccctacgagtgtgaaatctgccatgcgaggtttacgcagtccaattcattg
aaggcgcataaattgatacacacagggaacaagccggtatatgcgtgtgagctatgtcca
acgacgtgtgggcgcaagacagatctccggattcatgttcaaaagctgcacacctccgac
aaaccattaaagtgcaagaaatgtgggaaagcttttcctgacagatatactttcaagcaa
cataacaaatcccatgagggagagaaatgcttcaaatgtgacctgtgcccatatgcctcg
acctcggcaaaacacttggaatctcacatgctggttcacaccgagcagaaaccttatcag
tgcgatcagtgtgaccaggctttccgacagaagcagctgttaaagcggcatcagaacctc
taccacaacccagcgtatatcccccccatgcccagagaaaaaactcaagaatgccccgag
tgtgggaaggcatttagacacaaaggtaacttgattcggcacatggcaattcacgatcca
gatgcctctgcgcaagagaaagctcaagccctcaaaataggaagacaaaaaagattgcag
ctcattaatggacagcaggtggaggtttacacaggagaagttgacgaggatgaaattatg
gctgtagaaggacaggatggaaaccagtatgtggttctagaagtcattcagctacaggat
ggagaagggcatgtgatgatgtcagatggaatcccagtgacagacagttccctcgatgga
gcaggagttgctagtgttttaggctcttcgcctttaatggttcctgagacaattactgga
gacactataggccctattgatgggacctgtttagtttcagatccttcccttcttgaactc
cagcagaagaaatctgaactgaaaactgaaatcagtgcagaagccaaaaaggaagctcag
aaggagatggagacttgctttggctttgatgatgaagatgaaggacaaattcatttggaa
tttgatgaatga
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