Penaeus vannamei (Pacific white shrimp): 113821587
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Entry
113821587 CDS
T06111
Name
(RefSeq) patched domain-containing protein 3
KO
K12385
Niemann-Pick C1 protein
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
pvm04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
113821587
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
113821587
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvm02000
]
113821587
Transporters [BR:
pvm02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
113821587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
113821587
NCBI-ProteinID:
XP_069993660
LinkDB
All DBs
Position
23:complement(36609290..36619758)
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AA seq
994 aa
AA seq
DB search
MSGSMNKVTPDRDPDVPPAAGTQELGVLGRISGVIIGLLEHAFYCYGKAISRAPFVFIFL
CLAFTGFCAIGITKFTTEERPFKLWTPTDSDFLEITDWKEANFPSDLRLNMAIFEAENVL
EKRVILEMLRVHDVVVGTAVGDVSWEKVCAKVPTLTAALFGRRKRDVGDEAYPGLREEPR
VVRQTDDYEEEELDWSLILSREGYCDFQANMEQSCLENSLLEVFGYDRRDIESLSQTEII
EEINYADVSAVFGFPLNATKFLGGVERDSSGLIVRARTAMHMWFTRVNRTAIALGEYLDD
GGSGSQVDLMNFNWEQEFIKNVLNETDRPGDISFFLGASSSFGTISSSNIEGDLQFLTAG
FGIVFLYVVVMLGKFNLVEQRPVLSLLGLSCVGLAVGVSYGLCSAFGVPYGPVNNILPFL
LLGLGIDDMFVIMQSWNNLSPQEQTKDLHERIGSALRHAGVSITVTSVTDFVAFAIGSTT
VLPALRSFCLYAAIGIAAIYFFQSTFFVACLSLDQRRLEDSRHGFLWCWKIKNWTPNECS
QRDLCQTFFTEVYAKYLFKLPVKIVVIVITAAVVAVSGWGLSNLRQEFDPIWFLPQDSYL
YEFFMKQKYYYPSSGEEGTIYFGNVSLLAEMPKIEELVKQLNENEYVAEVDSWFLAYKKY
WGKQGISVPNPDQTEDGFLDQLSRFLHSPSGSPYRSRNFRFSGELICYEKAPPVTASSIN
YKHRMLQSSREKSKAMEDVKAIVRNANFTGYVRPWSRAYAGWETDQVIEEELYRNMGLAL
LVVFVVTLLLIASLPTSLMVLLCVFLTLIDVGALMHWWGLTIDTVSCIDLVLAIGLCVDY
AAHVGHTFMTHAGTRDERARATVGRIGPAVLNGGFSTFLSFVFLSNSSSHVFLTFFKIFF
AVCVFGLYHGLVFLPVLLSLAGPAPYPTAHAPTLQPTPVFTPAEKRDTIPNHGFIEKTLE
PGDEVNSNENDKGEQVNAASASTETNLGDQQEKY
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcagcatgaacaaggtgacgccagacagggatcccgatgttcctccagcagca
ggtactcaggagctcggggtcttgggccgaatcagcggcgttatcattggcctcttggaa
cacgccttttactgctacgggaaggcgatatcacgggcgcccttcgtcttcatcttcttg
tgtctggcgtttaccgggttctgcgcgatcgggattacgaagttcacgacggaggagcgg
cccttcaagctgtggacgcccacggattcggatttcctcgagatcacggactggaaggag
gcgaacttcccttcggatctcagactcaacatggccattttcgaggcggagaacgtcctc
gagaagcgcgtcatcttggaaatgctgcgagtgcacgacgtcgtggtcgggacggcggtg
ggagacgtctcgtgggaaaaggtctgcgcaaaggtccccacgctgacggccgcgcttttc
gggaggcgcaagagggacgtcggggatgaggcttatcccgggctgcgagaggagcccagg
gtcgtcaggcagaccgacgactatgaggaagaggagttagactggagtttaatcttgtcg
cgggaaggctactgcgatttccaagcgaatatggagcagtcttgtctggaaaacagtctc
ttggaagtgttcggctacgacaggagggacatagaatcgctctcacagacagagataatt
gaagagatcaactacgcggacgtgagcgccgtctttgggtttcccttaaacgccacgaag
ttcctagggggcgtcgagagggactccagcgggctgattgtgagggctcgaacggcgatg
cacatgtggttcacgagagtcaaccgtacagccatcgcactcggggaatatctggacgac
ggcgggtcaggatcccaggttgacctcatgaacttcaactgggaacaagagttcataaag
aacgttctgaacgagacggatcggcccggggatatttctttcttcctcggggcttcctcc
agcttcggaaccatcagtagcagcaacatcgaaggagacctgcagttcctcactgctggc
ttcggcatcgtgttcctctacgtcgtggtgatgctcggaaagttcaatttggtggagcag
agacccgtgctctcgctgctcggcctgtcttgcgtgggattggcggtgggagtgtcctat
ggcctttgctctgcgttcggcgtcccctacggccccgtcaacaacatcctgcccttcttg
cttctcggccttgggatcgacgacatgttcgtgataatgcaatcatggaataacctcagc
ccgcaagaacaaacgaaagacttgcacgagagaatcggcagcgccctcagacatgccgga
gtctccatcacagtcacgtccgtcactgatttcgtagcttttgccatcggaagcacgacc
gtcctgccagccctgaggtccttctgcctctacgctgccattggcatcgctgcgatttat
ttcttccagtcgacgttttttgtcgcctgcctctccctcgaccagcggcgcctggaggac
tctcgacacgggttcctgtggtgttggaaaatcaagaactggacccccaatgagtgcagc
cagcgagacctgtgccagacctttttcacggaagtgtatgctaagtatctgtttaagctg
ccagtgaagatcgtcgtcatagtcataactgcagcagtagtggcggtttccggatggggg
ctctcgaacctacgccaagagtttgatcccatttggtttttgccgcaagattcctacctt
tacgagtttttcatgaagcagaaatattactatccttcctccggtgaagaaggcacgatt
tatttcgggaacgtaagtctcttggccgaaatgccgaaaattgaagaactagttaaacag
ctgaacgaaaatgagtacgtggctgaagtcgacagctggtttctagcctacaaaaaatac
tgggggaagcaaggcatttcggtccctaacccagatcagactgaagatggctttctggat
caactctcgcggtttcttcactcgccaagtgggtccccttacagaagcaggaattttcgc
ttctcaggcgagttaatttgctacgagaaagctcctccggtgactgcgtcgagcataaac
tataaacacagaatgctccagtcgtctcgggagaagtccaaggccatggaggacgtgaag
gctatcgtcagaaacgcaaattttacgggctacgttcgcccatggtcgcgagcctacgca
ggctgggagactgaccaagtcatcgaggaagaactgtacaggaacatggggctcgctctc
ttggtcgtgttcgtggtgaccctcctgctaatcgccagtctcccaaccagcctcatggtc
ctactgtgcgtgttcctgaccctgattgacgtcggcgcgctgatgcactggtggggcctc
accatcgacaccgtatcgtgcattgacttggtgctggccatcgggttgtgcgtggactac
gcagcgcacgtgggacacaccttcatgacccacgctggcacgagagacgagcgggccagg
gccaccgtcgggaggatcggtccggctgttctgaacggaggcttcagtaccttcctctcc
ttcgtgttcttgtcgaattcatcgtctcacgtctttctcacgtttttcaagatatttttc
gccgtgtgtgtgttcggtctctaccacggcctcgtcttcctccccgtcctgctctcactc
gcgggcccggctccctaccccaccgcccacgccccgacgcttcagcccacgcccgtattc
acgcccgcggagaagagagacaccataccgaatcatgggtttatagagaagacgcttgaa
ccgggagatgaagttaattcgaacgagaatgataaaggcgaacaggtgaacgcggcttca
gcttcgacggaaacaaaccttggcgatcagcaagagaaatattaa
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