Penaeus vannamei (Pacific white shrimp): 113821980
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Entry
113821980 CDS
T06111
Symbol
hyd
Name
(RefSeq) E3 ubiquitin-protein ligase UBR5 isoform X4
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113821980 (hyd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvm04121
]
113821980 (hyd)
Enzymes [BR:
pvm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
113821980 (hyd)
Ubiquitin system [BR:
pvm04121
]
Ubiquitin ligases (E3)
HECT type E3
113821980 (hyd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
RCC1_2
Motif
Other DBs
NCBI-GeneID:
113821980
NCBI-ProteinID:
XP_027230280
LinkDB
All DBs
Position
23:complement(27523665..27568169)
Genome browser
AA seq
2863 aa
AA seq
DB search
MTSLHCVIHPLPGTEDQLNERLKELGLRLNWSGGVGVSAVAGLRENIRQVAIGPSHIAVL
TEDGRVARLVFSINTDALDLNKADHKQGRNCNKSNNQSSTKLTARMSTGGRRIVRTTSGS
GGVRGRGTGVIMGSSRPMLPAQYVPEELISQAQVVLQGRSRNLIIRELQRTNLDVNLAVN
NLLSRDDEDVEEPEESGDSYVPEDLISLLDAGISVAADHPSVIIDADAMFSDDMFGYSSV
RSRSGGSRGRAGERDREGSAGSGGSEHRADRELRWRDRHYSGPRKWLSNALLSVRVTQPP
TEAGKKKDSLLPDAIDVADNLQYWPERLGNQPAPRFSHIAALHSELVAVSTSGQVYQWRW
ADKDPYVHPELPNVHHPKAVSLGLAGERVVAISAAGVRCSVATESGKVATWLDETLADVA
AKLEQPAQSFPENDRILSLHTCQLYTCAWCESGSLFWWGVLPFNQRKKLWEKFRSKSRKQ
RSEITEGVQVGMRSSPMYHPGALAFSTSGGVPKIGQLLNAAWNLSDTCRFKILPPGGVNS
GCNNSSASSSTSGSGSSGTSSGSSTSFQGAAGSTSTSQNAATSNSGSSSSGSSGSGEKKT
VASEVLGPVAKILKCGDSKESSDKLDMPPPPSPASSTCSDTGSITSPASYKRGKRPTPRD
DIERFDEEEWPLRDVIFVEDTRPVPIGEVLAVDGNQVVVVPQTKEGKGNLRVIHRDQLQV
IRAGGNPRVPDCYQKTPKRIPVSEQGQILTVAVDGRGIHAIVRNGSRLTYVIYNLSSGKS
EQECVFPTESTAFMGSEPSAISLTINGESENVGVLRDGNSTIYPLSKDCVDSIKDPHWPD
LPPVSCLGVATHFLHGAGAHQKNHVALLVLALKTQTLMPKILRCDPEGVRQVLALIESDN
GAGMTSLTTEGIVEEKCDGNRNILHACISTCCPVTSKETEGESVLEKDPILGSFAWPPSS
SDTLSDTASAAGPEDDLMTPSSSKTTPGPSMPNLGTSDPAERKSYSLTILRTICDSPALT
PHLRNLLIARDSNGFTPFMLAVSGRAYQAALILFDVIHRVAHDSALDAESERRAVMQMIF
PRGSNPDDSPLHVLCYNDTCSFTWTGAEHINQDIFECRTCGLVGSLCCCTECARVCHKGH
DCKLKKTSPTAYCDCWEKCKCKALKSGHQTARFDLLSRLITETDLVNISNGRGENLLLFL
VQTVGRQVTEQKQWSRCRSSSSSSTRKNTLSDVVNMEVPDHDLEPPKFSRRALERLLNDW
AAVRAMIMTGHKEESPPSSASTDDINFMQFQGHTTHLDKFTYCLLVKLATQVEPRNLKLK
HLINSDDDERKMIADTMVTALINTLIRELHNDTVPGRKQEAEKVARRFIASVVRIFVILA
IEMMPNAGKKKPGSSYTQSLAKCIKVFESIIPVAVTELCDAADALMLPVRLNYVKPTAPF
PLTSTHVDGNHGCKEMFEVEPLQWQQHRMGGEPLSSAGGNSVSRGAGGSGGGEEEEEAGE
EEVAPLPGPAPGTRPRRARPDHILPPQVDDHDNEGGSERDDANERSEQEGDGGAEVEGGE
SDMELDLLAESDSDSDDNQSAVDNTSTQRSVQTGATAGSDGEDDSGESSPGEDEDDESEA
AETDEFDSGELFSDEQLERRVNTSSTARNIAPHNLQWAVRNPRDSTSRSGGTTGGPTATG
TSNPTSSGLIYIDPTSLRHGPTSTSTVTPSSHEPVSLATTNNTLARAFTIVIRQMSSLLS
LACDVVRDGGLTSRGPAGSGGGVPGSSSSATATTQMCLTPTIIAALLKQVDARLRPTWDW
LMSLMDSTESQLRFGRELNQLIEGSGSSSTPPTAPPAGVSQTRPRERSAGRTGLPFIRDP
LISPLSRYQSARRGARTTNTTADPQNARRDTLSYVVSLLRAHKNEHCDTLPDIDVGSLKH
IAYVFDALISYLRCCETDSSAHIDSGGAECTGFSWERDENENEDDMDDLPSVTPSAGDSE
SADEDSNLSNSRGRKHTFFQRSQSTLCLGSVGADVFSSPLQEALPLADKPHLLQPNARRE
ELFGIPRTHTHNTSQGTRIPLDTPLSRLGVLENLHMVGPYPPTPQQSYAHMLGSARTPDH
QPTDLSVYATGQIRDLKDEDMSEDSGETSQERAPIIVSPRRTGSSLGGGISDHSSGSSAS
YVPESTPARSSVKSVIVRVGSSTVANAFKSEVASSSSLSSSLSATAASTPCTPSSSLGGR
GGADLLVVPLDGRTSRGSEMGLHAPHDVSANVTIDTTHDQMRPALLRSGVSQDLLLGRWR
LTLELFGRVFIDDVGAEPGSIIAQLGGFPVKEAKFRREMEKLRNCQQRDLNLTKIDRERG
QLITQTFKELNTQYNNYHRRGTQSSPPLAVNRVKVTFRDEPGEGSGVARSFYTAIAEALL
SGEKLPSLESCQVRPKEVGLPVVRYSLYGQYKGRDRDRRQGASSSRSLQRRDARKTLSVD
ARPFYMTGEGSSNEHLPSNMLQIGEALFPKVQSLRPSLASKITGMLLELTHAQLLLLSAS
EDALRQKVDEAVDLILAQGRDHTPEYSPSHQDTDEGGEEPEDASAPLFYQPGKRGFYSPR
QGRPTPERLNAFRNVGRLLGLCLLQNELCPIYLNRHVLKYILGRPIRFHDLAFFDPVMYE
SLRKLVLDAENKDTGADVFKALDLTFSIDVIPEEGGTNIELISGGRNVEVTTANVYDYVR
KYAEYRMVKSEEKALQNIRDGVFDVIPGGSLDSLTAEDLRLLLNGVGDINVATLISYTSF
NDESAESSDRLHKFKRWLWSIVEKMTNQEKQDLVYFWTGSPALPASEEGFQPMPSVTIRP
ADDSHLPTANTCISRLYIPLYSTRAILRSKLLLAIKTKNFGFV
NT seq
8592 nt
NT seq
+upstream
nt +downstream
nt
atgacctctttgcactgcgtcatccaccctctgccggggaccgaagatcagctcaatgaa
agattgaaagaattaggattacgtttaaattggtcgggcggagttggtgtgagtgctgtg
gcagggctacgggaaaacatcagacaggttgcaattggtccatcacacattgcagtgctc
actgaagatgggcgagttgcaaggcttgtcttttccatcaatacagatgccttggatctc
aacaaggcagaccataagcaaggcaggaattgcaacaagagcaacaaccagagcagcacc
aaattgacagctcgcatgtccactggaggaagaaggatcgtgcgcacgacttctgggtct
gggggagtgagaggtcgtggtacaggggttataatgggatcttcgcgacccatgctccct
gcccagtatgtaccagaagaactcatttcccaggctcaggtagtccttcagggccggagt
cgtaatctaatcattagagaattacagcgtaccaacctggatgtgaacttagcagtgaat
aacctgttgtcaagagatgatgaagatgttgaagaacctgaggaaagtggagattcctat
gtacctgaagacctcatctccctcttggatgctggaatttctgttgctgctgaccatccc
tctgtaataatcgatgcagatgcgatgttctctgatgacatgtttggatactcttctgtg
cgcagccgatctggcggtagccgtggaagggcaggagaacgtgaccgtgaggggtcagct
ggatcaggaggttcagaacaccgagcagacagggagttgagatggagggaccggcactac
tcgggaccccgtaagtggctctcgaacgcgctgctgtcggttagagtcacacagcccccc
acagaagcaggaaagaagaaagactccctactcccagatgccatagatgtagcagacaac
ctccagtactggcctgagagactagggaaccagccagctccccgtttctcacacattgct
gctctgcattctgagcttgtggctgtgtcgacatctggccaggtctaccagtggcgttgg
gcggacaaggatccatacgtgcatccagaactcccaaatgtgcaccatccaaaggcagtc
tctctaggtcttgcaggggagagagtggtggcaatcagtgcagcaggtgtgagatgcagt
gtagctacagagtctggcaaggtggcaacttggttagatgaaacattagcagatgtggca
gcaaaattggaacaaccagctcagtctttccctgagaatgatcgcatcttgtcgctgcac
acctgtcaactctatacatgtgcttggtgtgagtctggttccctgttttggtggggtgta
ctcccattcaaccaacgcaagaaactgtgggagaaattccgtagcaaaagtcgtaaacag
agatcagagatcacagaaggagtacaagtaggcatgaggtcctcacccatgtaccatcca
ggagctcttgccttttctacttcgggaggtgtgcccaagattggtcagttgctaaatgct
gcctggaatcttagcgacacttgcagatttaagatacttcctccaggaggtgtaaatagt
ggatgtaacaatagtagtgcgtccagcagtaccagtggaagtggaagtagtggtaccagc
agtggttccagtaccagctttcagggtgctgcaggctcaacatcaacatctcagaatgct
gccacaagtaacagcggtagttcctcgagtggtagtagtggaagtggggagaagaaaact
gtggcatcagaagtccttggaccagttgcaaagatcctgaagtgtggtgacagcaaggag
tcttctgataagcttgacatgccccctccaccttcacctgcttctagcacatgctctgac
actggatctattacgtcccctgcttcatacaagcgtggaaagagaccaacacctcgcgat
gacatagagaggtttgacgaggaagagtggccattaagagatgtaatatttgttgaagac
acgagaccagtgccaattggagaagtgctggcagttgatggcaaccaggtggtggttgtg
ccacagacaaaagaaggcaagggcaacctgcgtgtcatacaccgagaccagctgcaggtt
atccgtgcaggtggcaaccctcgtgttccagactgttatcagaaaactcctaagcgcatt
cctgtcagcgagcagggccagattctcactgtggctgtggatggcagaggcattcacgcc
attgtcaggaatggcagtcgcttgacatatgtcatatacaatctcagctctgggaaatca
gagcaggaatgtgtatttccaactgagagcacagcattcatgggatcagaaccatctgcc
atatcacttactattaatggagagagtgaaaacgttggtgtgcttcgtgatggtaatagt
accatctaccctctgagcaaagattgtgttgactccatcaaagaccctcactggcctgat
ctacctccagtgtcatgcttaggtgtagccacacatttcttgcatggggctggtgctcac
cagaagaaccatgttgcattactggtgctggcactcaagacacaaactctgatgccaaaa
atcctgcgatgtgatccagaaggtgttaggcaggtcttggctctcattgaaagtgacaat
ggagctggtatgacaagtttaacaacagagggaatagtagaagaaaagtgtgacggaaac
cgcaacatcctgcatgcatgtatatctacttgctgtccagttacaagcaaagagaccgaa
ggggaatctgtattagagaaagatcctattttgggtagctttgcttggccccctagctca
tctgacaccctcagtgacacagctagtgctgcagggccagaggatgacctcatgacccca
tcttcctccaaaaccacaccagggccaagcatgcccaacctaggaacatcagaccctgca
gagcgtaaatcttattctctcactatcctgagaaccatctgtgacagccctgcactaaca
ccacacttgaggaacctgctcattgctcgtgactcaaacggctttactcccttcatgctg
gctgtctctggtcgggcgtatcaggcagccctcatcctttttgatgtcattcacagggtg
gcacatgatagtgctcttgatgctgagagcgaaagacgtgctgtcatgcaaatgatattc
ccaaggggcagtaacccagatgactcgccgcttcatgtcctgtgctataatgatacctgc
tccttcacttggacaggagcagagcatattaatcaagacatatttgagtgtcgcacctgt
ggccttgttggctccttgtgttgctgtacagaatgtgcaagagtgtgccataaagggcat
gactgtaagctcaagaaaacttcaccaacagcgtattgtgattgctgggaaaaatgtaaa
tgcaaagctctgaagtctggccatcagactgcacgatttgaccttttgtcaaggctcatc
acagagactgatctagtgaacatatccaatggtagaggtgaaaaccttctcctgttcttg
gtacaaactgttgggcggcaagtcactgaacagaagcagtggtctaggtgtcgttcgtcg
tcatcatcatctactcgtaagaatacgctgtcagatgtagtcaacatggaggtacctgac
catgatttagaaccacccaagttcagccgaagagcacttgaacgtttgctgaatgactgg
gcagctgtgagagccatgatcatgacgggtcataaggaagaaagtcctccttcgtctgca
tccactgatgatattaatttcatgcagtttcaaggtcatacaacccacctggacaaattt
acgtattgcttgcttgtgaagttagcaactcaggttgagcctaggaatctcaagctgaag
cacctaattaatagtgacgatgatgaacgaaagatgattgctgacacaatggtgactgct
ctcattaacacattgatcagagagctgcacaatgacacagttcctggaagaaagcaggaa
gcagaaaaggtggccaggaggtttattgcatcagtggttaggatctttgttattttagcc
attgaaatgatgcctaatgctgggaaaaagaagccaggcagctcctacacgcagtccctt
gctaaatgtatcaaagtatttgagtccatcattccagtggctgtgacagaactatgtgat
gctgcagatgcccttatgttgcctgtacggctcaactatgtcaagccgactgcacctttt
ccactcacgtcaacccatgtagatggcaatcatggctgcaaggagatgtttgaagtggaa
ccccttcagtggcaacagcatagaatgggtggtgaaccattatcttcagctggaggaaat
agtgtgtccagaggagctggtggaagtggtggaggggaagaggaggaggaggctggggag
gaagaagtagctccactcccaggcccagccccagggacaagaccaaggagggctcgacca
gatcacattctccctccccaggtggatgaccatgataatgaagggggaagtgaacgtgat
gatgctaatgagcgttcagagcaagaaggagacggaggagcagaagtagagggtggagaa
tcagacatggaattggacttgttagcagagtcagacagtgacagtgatgataaccagtct
gctgtagataatacatcaactcaacgatcagttcagactggtgccactgctgggagtgat
ggagaggatgattctggtgagtcttctccaggtgaagatgaagatgatgagagtgaagca
gctgaaacggatgaatttgattccggtgaactcttttctgatgagcagttagaaaggcga
gttaacacttcctctactgctcgtaatattgcacctcacaatctgcagtgggctgtgagg
aatccccgtgatagtacctcacgttctggaggaacaactggaggccctacagccacaggt
acctccaaccctacctctagtggcttaatatacattgatccaacttcactcaggcatgga
cctacatccacatcaacagttacaccatcctcccatgagcctgttagtctggctactact
aacaatactcttgcaagggcttttacaattgtgattaggcagatgagctctcttttgagt
ttggcctgtgacgtggtaagagatggaggcctcacctctagaggtcctgctggaagtgga
ggtggtgttcctggcagcagcagtagtgccactgccaccactcagatgtgcctcacaccg
accattattgcagctcttcttaagcaggttgatgctcgccttcgtcccacttgggattgg
ctgatgagcctcatggattcaacagagtcccagctaagatttggaagagaattgaaccaa
ctcattgaaggaagtggaagcagcagcacaccaccaacagcaccaccagcaggagtatcc
cagacacgcccccgtgaaagaagtgcgggaagaactggccttccatttatacgagatcca
ttgattagtccactttcaaggtaccagagtgctaggcgtggagcaagaaccaccaataca
acagctgatccacagaatgctcgaagggatactctctcctatgtggtctctcttctgcga
gcccataagaatgaacactgtgacacactaccagatatagatgttggatctctgaaacat
attgcatatgtatttgacgctctcattagctacttgcggtgctgtgagacagacagcagt
gctcacatagactcgggtggggctgagtgtacgggtttttcttgggaacgggatgagaat
gaaaatgaggatgacatggatgatctgccatcagtcaccccttcagctggtgatagtgag
tcagctgatgaggattcaaatctttccaattctagaggacgaaaacatacattcttccag
agatcacagtcgacactttgcttgggatcagtgggtgcagatgtatttagcagtccttta
caagaagctttgcctcttgctgataaacctcacttacttcagccaaatgctcggagagaa
gaactgtttggcattcctcgaacacatactcacaatacaagtcaagggactagaattccc
ctggacactccattgtcaagattgggtgtattagagaatctacatatggtgggcccatac
ccaccaacaccacaacagtcttatgcacatatgttaggctctgccagaactcctgaccat
caaccgacggacttgtctgtatatgcaacaggacaaattagagatttaaaggatgaagac
atgagtgaggatagtggtgagacatctcaggagagagcaccaatcattgtgtctccaagg
cgtacggggagcagcttaggtggggggattagcgatcacagcagcggctcttctgcctcc
tacgtgcctgagtccacccctgcccggtccagtgtcaaaagcgttattgtacgggtgggg
tcttctacagttgccaatgcgtttaaatctgaggttgcctcatcatcgtcactgtcgtca
agcctgtcagccaccgctgcttccaccccttgcacaccctcctcaagcctagggggtaga
ggtggtgcagacctacttgtggtgccgctagatggaagaaccagcaggggttcagagatg
ggccttcatgcaccccatgatgtgtctgctaatgttaccatcgataccacgcatgatcag
atgagacctgctctcttaagaagtggagtttcccaagatcttctgcttggacgttggaga
ctgaccctagagctgtttggtagagtcttcatagatgatgttggagctgaaccaggctct
atcattgcccagctaggaggattcccagtcaaagaagccaaatttagacgggaaatggaa
aagttgagaaattgccagcagcgtgatttgaatctgacaaagatcgaccgtgagagagga
cagttgatcacccagacattcaaggaactcaacactcagtacaacaactatcaccgtcga
ggaacacagtcatcaccacccttggctgttaaccgagttaaagtgacattccgtgatgag
ccaggggaaggctctggtgttgctagatcattttacacagccattgcagaggccctgttg
tcaggggagaaactcccgagcctggaatcttgccaggtgaggccaaaagaagttggattg
cctgtagttcggtatagtctatatggtcagtacaaggggcgagacagagatcgtcgccag
ggagcctcgtcatcaaggtcattgcagagaagagatgcccgcaagacgctctctgtagat
gcgcgacccttctacatgacgggcgagggcagtagtaatgaacacttaccatcaaatatg
ctacagattggtgaagccttgttcccaaaggtgcagagtcttagaccatctttggcaagc
aagatcacagggatgcttctagaactgacacatgctcagttgctccttctgtctgcaagc
gaagatgccctgcgccagaaagtagacgaggcagtggatcttatccttgctcagggtcgt
gaccacacaccagaatattctccatcccatcaagatacagatgaaggtggggaggaacct
gaggatgcaagtgctcccctgttctaccagccagggaaaagaggattctactctcctcgc
cagggtcgcccaactcccgagagacttaatgccttccgcaatgttggcaggttacttggg
ttatgcctgttgcagaatgaattgtgcccaatctacctaaaccgccatgtcctcaagtac
atcctaggacgccccattcgtttccatgacttggccttttttgaccctgttatgtatgaa
agcttgcgaaagctggtgctggatgcagagaacaaagacaccggagctgatgtgttcaaa
gctctggaccttaccttcagcattgatgtaattcctgaagaaggtggcacaaatatagaa
ctgattagtggtggcagaaatgtggaggtgacaacagctaatgtatatgactatgtccgc
aagtatgcagagtatcgcatggtaaaatcggaagagaaggccctacagaatattcgtgat
ggtgtattcgatgtaatcccaggaggatccctagattccctaacagctgaagacctgagg
ctgttgttaaatggggttggggacatcaatgtagctacacttatatcctatacgtctttc
aatgatgagagtgcggaatcatcagaccgtcttcacaagttcaaacggtggctatggtct
atagttgagaaaatgacaaaccaggaaaagcaggacttggtatacttctggaccggttct
cctgctctgcccgcctcagaagaaggattccagccaatgccatctgtcactatcagacca
gctgacgactcgcatctacctacagcaaacacttgcattagccgcctatatattcctttg
tattctactcgtgctattttgcgatctaaactgttgttagccatcaagactaaaaacttt
ggctttgtgtga
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integrated database retrieval system
