Penaeus vannamei (Pacific white shrimp): 113822050
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Entry
113822050 CDS
T06111
Symbol
U4-U6-60K
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113822050 (U4-U6-60K)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113822050 (U4-U6-60K)
Spliceosome [BR:
pvm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
113822050 (U4-U6-60K)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Nbas_N
Beta-prop_DCAF12
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
113822050
NCBI-ProteinID:
XP_027230365
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All DBs
Position
35:complement(30352754..30358947)
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AA seq
508 aa
AA seq
DB search
MSEGENSPVPLGSGGAPGERRWYGSLEATMGGSESPADSPGSPAASTNIHTSNEYMELDE
PEILDEKKALLEEFERKRRARMIHVTTDDSEVKQQLRQLGEPICLFGEGPADRRNRLKEL
LSRLGEDALKKTVAGTQDAEAPEQEQQRPEETWYHEGPQALKEARTFILEYSIPRARARL
KKEHLDNEIPEATRTARRQEVQNKLRSFSLLGSQNADSRPISYCSFSPNGKLLATSSWSG
LCKIWKVPDCQEEQKMSGHNCYVDCIEWHPSATLTMEPNALNLVSSGRDGTVQLWNLCGE
ALGELPRLEARVSRVVFHPSGRFLGACVHDNSWRLWDLEIQEEVLFQEGHSKPVFCLDFQ
GDGSLAATGGMDAFGRIWDLRSGRCVMFLTGHQNAILGINWSPDGYHLVSGSEDNSARIW
DVRARRCIYSIPAHTGIVTGARYDKIGGQYIVTSSYDGSVRLWCHGSFQPMRALEGHGQK
VMGVDISPTDGIIATCAFDRTFKLWGPD
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaggcgagaactccccagtgcccctggggagtggaggggcaccaggggagagg
aggtggtatgggtccctggaggccaccatggggggcagtgagtctccggctgactcgcct
gggagcccagctgcatccacaaacatccacacaagcaacgagtacatggaactcgatgag
ccagaaattttggacgagaagaaggctttgctggaggaatttgagaggaagagacgtgcg
cgcatgattcatgttacaacagacgacagtgaggtgaagcagcagctgcggcagctggga
gagccaatctgcctgtttggagagggaccagcagaccgcagaaacagactcaaggagctt
ttgtctcgcctgggagaggatgccctgaaaaagaccgtggcggggacacaagatgcagag
gcacctgagcaagagcagcagcgcccagaggaaacctggtaccacgagggtcctcaggca
ctgaaggaggctcgaacgtttattcttgaatattccattcctagagcaagagcaagattg
aagaaggaacatttggacaacgagatcccagaggccactcgcacagccaggagacaagaa
gtgcagaacaaattgcggtccttcagtcttcttggaagccagaatgcagactcaaggccc
atctcttattgtagctttagtcctaatggcaaactccttgcaacctcctcctggagtggg
ctttgcaaaatatggaaggttccagattgccaggaagagcaaaagatgtctggccacaat
tgttacgttgattgcatagagtggcatcccagtgccacactcacaatggaaccaaacgcg
ctgaacttggtatcaagtggtcgtgatggtactgtccagctttggaatttgtgtggagaa
gctcttggggaactaccgcgtcttgaagcaagggtgtcaagggtagtgttccacccaagt
gggaggttcttgggggcatgcgttcatgataacagctggcgtttgtgggaccttgagatt
caggaggaggtgctcttccaggagggacattccaagcctgtcttctgccttgacttccag
ggggatgggtccctggcagcaacaggggggatggatgcatttggtcgcatctgggatctc
agaagtggcaggtgcgtcatgtttctgacaggacaccagaacgctattttaggtatcaac
tggtctcctgatggttatcatcttgttagtggaagcgaggacaattctgccagaatttgg
gacgttagagcacgtcgctgtatttacagcataccagcacatacagggatagtcacaggg
gctcggtatgataaaataggaggccagtatattgtcaccagttcatatgatggttctgtt
cgcttatggtgccacggatccttccaacccatgcgtgcactggaaggccatgggcagaag
gtcatgggggtagacatttcaccaacagacggaatcattgccacgtgtgcctttgatcgg
acatttaaactgtgggggccagattaa
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