Penaeus vannamei (Pacific white shrimp): 113822721
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Entry
113822721 CDS
T06111
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03013
Nucleocytoplasmic transport
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113822721
03015 mRNA surveillance pathway
113822721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113822721
03041 Spliceosome [BR:
pvm03041
]
113822721
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113822721
Spliceosome [BR:
pvm03041
]
Complex C
Other components
EJC/TREX
113822721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
113822721
NCBI-ProteinID:
XP_027231058
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All DBs
Position
9:complement(7402409..7411793)
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AA seq
946 aa
AA seq
DB search
MAPGVTGTSLVDAIETEIERAKQDLKGVDENLRKLTGRDFNDPNQRGEQRRVRLSSGGRD
EEPPAKRRPPGGVFARLGGVVQDQQHVDHRGKPRDFRGEHRPTPDLRGDLRAEIHGDMRG
RRVQEVAEEDEKMPKPSLPSSVARPQADMKSRTEAAAELTKDRASRDRNRRMFGALLGTL
KRFKNDEAKQKDKEEQRAAIERKLEEKGRVEKEELRRERLELINQRQERKAQIKRLTVKM
ARVKEHEQWEAHQMKLTRFIRTKSTPSIFWIPRTHTAKTTSLVRASHDNIMRELEEDRLR
MKEELEEILGSRAEDDQGEMGRDGAEGGEEEEEETYVHRGVRSAVARQGEGGVSTSLDNC
PDLLDYEAEEGELVYGEADLSGKDDDDTERMVVQVDGRGEGARKVEIVASQSEEGTSGLE
RESKGNDSEKENEGKPRDGSRERERDRYNREKDKNREGDRDRKNKERGKEKDRIREKDRD
REMERDRGKDRIVGRDKERERERDKSKEKSRDTVEREKNRDTGKNREVQTLYNKETELEA
TVVHVKIEKDDDDEAGPKASEAAFKKVKEEKPDKAPTSTADKPDVDVASVPTEIPPLPPA
STLPLPPATAAPPSPPPAGPEPSEEEQQECQTEDPERMEESSSHKNDDEPAALSHSPTSG
KDPPPTESKNTQDKNDKEGETEVGKKSSSKSKHNRDEKAKAQKAQKKLDKRKKKKAGEEK
KKKKKGDDSGSSDNSSSEDSSSDSSSDSSDSGSSDSESSSSSSGSSSGSSSDSESDSSST
TSSGTDSESDQERRKRKVRRRGRESRSGDSSSDSEGEGGEKKSRKMTKKKDSTEHGKAVN
VKIKEEPPSDEEKSKRDAKEKSKDKDTKGKEKEGSKAKEGDKERERDAGRRREREKERER
ERDKDKKNIRSKSKERKRERSRSRERRRDRSRSRDKERKGDRKDRR
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgggcgtgacgggaacctcgctcgtcgacgccatagaaacggaaatagagagg
gcgaagcaggacttaaaaggcgtcgatgagaacttgagaaagctaacaggaagggatttt
aatgacccgaaccagcgtggagagcagcggagagtacgtctatcctctggtgggagagat
gaagagcccccagccaagcgaagacccccagggggggtctttgccaggctgggaggtgtg
gtgcaagatcagcagcatgttgaccacagagggaagccccgagattttcgcggggagcac
cgtcccactccagacttgaggggagacttgcgggcggagatccatggggatatgcgaggc
agacgagtgcaggaggtggctgaggaggatgagaagatgcctaagccatctctgccttcg
tctgtggctcgcccccaggcagacatgaagtcccgtacagaagctgcagctgagcttacc
aaggatagagcttctcgggacaggaaccgccgcatgtttggtgctctacttggtactctc
aagcgattcaagaatgatgaagcaaagcagaaggataaggaagaacagcgcgctgccatt
gagaggaagctggaagaaaaaggtcgtgtggaaaaggaggagttgcgccgagagcgacta
gaactgatcaaccagaggcaagagaggaaagcacagatcaaacgtctcactgttaagatg
gcccgtgtgaaagagcatgagcagtgggaggcacaccagatgaaattaaccagattcata
agaaccaagtccacgccctccatcttttggatccctcgaacccacactgccaagaccact
agcctcgtgcgagcctcacacgataacatcatgagggaactcgaagaggaccgtctccgg
atgaaggaagagctggaggagatactagggtcacgtgcagaggatgatcagggcgagatg
ggcagggatggcgcagaggggggggaggaggaggaggaggagacctacgtgcacaggggg
gtccgctcagccgtcgccaggcagggggaggggggtgtcagtacctctcttgataactgt
cctgatttgttagattacgaggctgaggagggagagctagtatatggtgaggcagacctg
tcaggtaaggatgatgatgacactgagcgtatggtagtccaggtcgacggcaggggagaa
ggtgctcgaaaggtagaaattgtagctagccagtcagaggaaggaacatcaggtttagag
agagagagtaaaggcaatgatagtgagaaggagaatgaagggaaaccaagggatgggagc
agggagagggaaagggataggtacaatagggagaaagataagaatagggaaggagacagg
gataggaagaacaaggaaaggggtaaagagaaagatagaattagagagaaggatagagat
agggagatggaaagagatagagggaaagacaggattgttgggagggataaagagagagag
agggagagggacaagtcaaaggagaagagcagagatacagtagagagggaaaagaatagg
gacacaggcaagaacagagaagtgcagaccctctacaataaagagacagagctggaggcc
acggttgtgcatgtcaaaattgagaaagacgatgatgatgaagcagggcccaaagcatcc
gaggctgcattcaagaaagtcaaggaggagaaacctgacaaggcacccacaagcacagct
gacaagcctgatgtggatgtggcttccgtccccaccgaaatcccccctttacctcctgca
tccacattgccactgcctccagccactgctgctccaccttcccctccccctgcgggtcct
gaacccagtgaggaggagcaacaggaatgccaaacagaagatcctgagagaatggaggag
agcagcagccacaaaaatgatgatgaaccagctgccttgtcccacagtccaaccagtggg
aaagatccacctcccacagagagcaaaaacacacaggataagaatgacaaggaaggggaa
acagaggtaggtaaaaaatcttcatccaagtccaaacacaacagggatgaaaaggcaaaa
gcacagaaagcacagaagaagcttgataaaaggaagaagaagaaagcaggtgaagaaaag
aaaaagaagaagaagggtgatgactcgggctcatcagacaatagcagtagtgaagacagc
agtagtgatagtagcagcgatagtagtgatagtggtagctcagattcagagagctcgtca
tccagctccgggtcatcctctgggtcttcatctgactcggaaagtgactccagctccacc
accagctcaggcaccgactctgagtcagatcaggagagaaggaagagaaaggtgaggcgg
agaggacgagaatcaagaagtggggatagcagtagtgatagtgaaggagaagggggagag
aagaagagcaggaaaatgacaaagaagaaggactccacagaacatgggaaggcagtgaat
gttaaaataaaggaggagccaccaagtgatgaggaaaagagtaagagagatgcaaaagag
aaaagtaaagataaagacacaaaagggaaggaaaaggagggctcgaaagctaaggaaggg
gataaggaaagggagagggatgctggtagacgaagggaaagggaaaaagagagggagagg
gagagagacaaggacaaaaagaatattaggagcaaaagcaaggagaggaaaagggagagg
agcaggagtagagaacgtagaagagacaggagtaggagcagggataaagagaggaaaggt
gacaggaaagataggcgataa
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