Penaeus vannamei (Pacific white shrimp): 113822948
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Entry
113822948 CDS
T06111
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvm04131
]
113822948
Membrane trafficking [BR:
pvm04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
113822948
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
DUF7491
ATG16
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
113822948
NCBI-ProteinID:
XP_069973357
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All DBs
Position
40:complement(25764659..25794169)
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AA seq
1570 aa
AA seq
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MSWFDTAGFTSLAKSALKEAQRTIDKALDIEEDSENVVPATTISSPGQKGISEKLKEESE
NFFASFGLDKKKSPLTPANSPVDSSAGTTPVQVEFDGLETQESPTTVSEDGRKTSSAMVG
SLWGSFTGSFFENTLIGKQQSEDIPGSTSEKDVVATQPPRSSTSLPSLKLAKSPVSTQPR
TSSLEEQRGAQQSEVGDSDEQKSTDDGEGSRQEWGWGWESSIMVMSGEQQQLEGEFGTSQ
AELEAREDSLADDSIDVEGFARSRLVVGSVDSDSGGLMRQESQGSLCGRSVDLDVPSSIS
EDVFDGSTESHRSSALERGCDQGSECSEAPRRSSLSHIIRPENCDQKASMSRGNSEVDTP
DSIVVLTSDGSSPEGDSSRLSTGSTDRSKLTVSLHPEKITSPISSPESIEVLGSSSLVTS
PSSIEVLSGVSSSDSSPTHQDSCSNTLTQDLSPTPSHIVSTQPTLQTSNKHAVEAPALSS
ALIQEKVQQEIRGTDKSSIDRKEWESKGSAEESTTSQGQAVVKQPTHRETEEPVCSSKEA
ASPKVLAESSPGIREADSNSRASSSLTEDTSASESIHSTSTSSTHTVLDASLIAHDAQVP
SESGESAPPEGGNLSAVLDGNIAADETTKCDSEASAEERKGVVAATSGAVSTADVVAEGM
EGNIGGASLDMSVESGGSSDTITASVDSTQMLWSSRSHISGSEQEQIESSVIQDSGMTGS
GGSVVRCLLEEAMGDEEATSGASSPPEREHSPSSSERSEALKVGSGHTSGHSSGDEIETT
TSSDIEVISSPSLDGSTVARGSAAASRVWASAQRGLRSFLNDRSESPASDSSSNNKKNNT
EKAETVPSSMTTSFTSISESEGEPYTPLVLGDLNSLDHSRISQVLHDLQHFEKGHRRNQS
NLSETSESSSEPHSPEVEKLLKKISQLSEILEARETKLMELSQVNAALQDTNLRLKTNIE
ELEGGGGTDATESLREEYTQRLVTMERKFQQALREKEAIKKQLEEVRAEAATRLSSSEVA
REREERDTVIQELREEGEKLSKQQLNYSNIIKKLRAKEKESETTIKTQKDKLEEQSRELE
RLRKQLSAKEEVERRQIDAVCQLNTNNQRLEQLIKDTNAENAELEGKMSVLKTALDTAYK
EMAELQRAAATKDAEAQEQALSAEVAARKQIEAALAEAQSQARREQEALMAQVLELQDTL
SRAESQANRKERQLRADITELQQRVSEAESRAEELSGAVSAATRPLLRQMENLQSTHATQ
QSTWENLEATLTRRLNEAQTTAASSLEKERAARDQCSEMGAKAAALQTQVANLQAENTKL
SSELEILTSKMNSLAETRSKESTQILALKTSFADEIREVKRERDSLEQQLEIEKTALTAE
KKKTSALQEQVKERDRKLIQATSGAGESHTSTPRSSPTPSLSRLSMTGSLNESFSGSQWG
DEVFESGWSRGTSLYESMRGNATATVEALTSQLRQREGEVHHLHSEVTRYEAQRESLAQE
LVSMTRQIETLQTKVQDFERLKAQYTDMEQKYNALLQMHGEKVEEVEELRLDLADVKEMY
KAQIDALLRQ
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcgatacggccgggttcacttccctggccaagtcagccctgaaggaagcc
cagcgcaccattgacaaagccctagacatcgaggaggatagtgagaatgtcgtgccggcc
acgaccatctcttcgcctggacagaaagggatttcagagaagctcaaggaagaatcagag
aatttcttcgcctccttcgggctggacaagaaaaaatcccccctcacgcccgccaactcg
cctgtagactcgtcagctggaacaacgcctgtgcaagtagaatttgatggcttggaaact
caagagtcacccaccacagtaagcgaggatggccgcaaaacttcatctgccatggttggg
agtctttgggggtcattcactggttccttctttgaaaatacgcttattggtaaacagcaa
tcagaggacatcccaggaagcacatcggaaaaagatgtcgttgccacccagcctcctcgc
agtagtaccagtttaccatcactgaagttagcaaagagtcccgtgtcaactcagcctcgt
acttctagcctcgaagagcagagaggagctcagcagagtgaagtcggagacagcgacgaa
cagaagtcaacggacgatggagagggcagcaggcaggagtggggatggggctgggaaagt
agtataatggtgatgtccggtgaacagcagcagttggaaggggaatttggcacatcccag
gctgagctggaagccagagaggacagtttggccgatgactccatagatgtagagggtttt
gccaggagccgcttggtcgtgggcagcgtagacagcgacagcggaggcttgatgcgccag
gaaagtcaggggtctctgtgcgggagatctgtcgacctggacgttccatcctctatatcg
gaagacgtgtttgatggcagcacggagagccacagaagcagcgcactagagagaggctgt
gaccaagggagtgaatgttccgaagctcctagaaggagtagtttgagtcatatcataagg
ccagaaaactgtgatcagaaggcgtcaatgtcgcgtggtaattccgaagtcgacacacca
gacagtatagtggtacttacgtcagatggtagctcaccagagggtgattcttcgagactc
agcacaggtagtaccgacagatcgaagctgacggtaagcctgcatcccgagaaaatcacc
agccctattagctcccccgagtcaatagaagttcttggatcatctagtctggtcacgtca
ccttcttctatagaggttttaagtggtgtatcatctagcgactcatctcccacacatcaa
gattcatgtagcaataccctaacccaagacctaagtccgactcccagtcacattgtcagc
acacagccgacgctacagacatcgaataaacacgccgtagaggcccctgcactcagctct
gccttgattcaggaaaaagtccagcaggaaatcagaggaactgataagtcttccatagat
agaaaggagtgggagtctaaggggagtgcggaagagtccactactagtcagggacaggct
gtggtgaagcagcccacccacagagagacggaggaacctgtctgttcctcgaaagaggca
gcgagtccaaaagtgctggcagagagcagtcctggcatcagggaggcagacagtaattcc
cgagccagcagtagtctgactgaggacacgtctgccagtgagagcatccacagcacatcc
acctccagcacccacacagttcttgatgccagcttgattgcccatgatgctcaagtaccc
tcagagtcaggggaatcagcaccacctgaaggaggaaacctgtctgcagtgcttgatgga
aatattgctgctgatgaaaccaccaagtgtgacagtgaggcatcagctgaagaaaggaag
ggggttgtcgctgcaacatctggggctgtcagtactgcagatgtcgttgcagaaggaatg
gaaggaaatattggaggggcatctcttgacatgtccgtggaaagtgggggcagttccgat
accatcacagcctctgtggattcaacgcagatgttatggtccagtagatcccatatcagt
ggaagcgaacaagaacaaatagagagcagtgtaatacaagatagtggaatgacgggctca
ggtggatcagtcgtgaggtgtctccttgaggaagccatgggggacgaagaagccactagc
ggtgcatcatcccccccggagagggagcattctccatcatcctctgaaaggtctgaggca
ctgaaagtcggatcgggccacacatcaggacacagctcaggtgatgagattgaaaccacg
acatcatctgatattgaagttatttccagcccaagcttggatggaagcacggtcgcacga
ggatcggcagcagcatcaagagtttgggcgtccgcacaaagaggactccgaagtttcctc
aacgacagatctgaatcacctgcatcagattcttcttccaacaacaagaagaacaacaca
gagaaagcggagacggtcccttcatccatgaccactagcttcaccagcatcagcgaatcc
gaaggagagccctatacccctctggtcctgggcgacctcaatagtctcgatcattcgcgc
atctctcaggtgctccacgacttgcagcactttgagaaaggccatcgtcgtaaccagtca
aatctctcagaaacaagcgagagttcctcagagccacattccccggaggttgaaaaactc
ctcaagaaaatctcgcagttatccgagatactggaagctcgagagacaaaattgatggag
ttgagtcaagtcaatgcggcattacaagatacaaatttacgcttaaaaactaacatcgag
gaactggaaggaggaggaggcacagacgcaactgagtccctgcgagaggagtacacacag
cgcttggtcaccatggagaggaagttccaacaggcactgcgagaaaaggaggccatcaag
aaacagcttgaggaggtccgagcagaggcagcaacacgactcagctcctcagaagtggcc
cgggaacgcgaggagagggacactgtcatccaggaactgcgcgaggaaggcgagaaactc
agcaagcaacagctcaactactccaacatcatcaagaagctcagggccaaggagaaggag
agcgagacgaccatcaagactcagaaagacaagttagaagagcagtcaagagaactagag
cgtctgaggaagcaactctctgccaaagaggaggtggagagacgtcagatcgatgccgtc
tgtcaactcaacaccaacaaccagcgactggagcagctgataaaagacaccaatgcggag
aatgcggaactcgagggcaagatgtccgtcttgaagactgctttggatactgcctacaag
gagatggcagaactgcaacgggcggcggccaccaaagatgcagaagcacaggagcaagcg
ttgagtgcagaagtcgcagcaagaaagcagatagaagccgctttagccgaggcacaatcg
caggcccgcagggagcaggaggcactcatggctcaggttttggagttgcaggacacgcta
agcagagcagagagtcaagcaaacaggaaagagagacaattaagagcggacataacagaa
ctgcagcagagggtgtcagaagcggaaagccgtgcagaggaattgtctggtgccgtgagt
gccgcgacaagaccattgctgcggcagatggagaacttgcagtcaacccacgccactcag
cagtccacgtgggagaatctggaagcaactctgacccgacggcttaatgaagcacagaca
actgctgcatcaagcctcgaaaaggaaagagcagcccgagatcagtgttccgagatgggt
gctaaagctgccgctctgcagacacaggtggccaacttacaagcggaaaacacaaagctc
tcttccgagctggaaatcctcacttctaaaatgaactcactggcggaaacgcgatcaaaa
gagagcactcaaatactagccctcaagacatccttcgctgatgaaataagggaagtaaaa
cgcgagagggacagcctggaacagcaacttgagatagagaagaccgcgttaacggcagag
aaaaagaagacatcagcccttcaagagcaggtgaaagaacgcgaccgcaagctaattcag
gccacaagcggtgcaggggagagccacacgagcaccccacgctcttcacccacaccgtct
ctgtctcgtctctccatgaccgggtccctgaacgagtctttctccggatctcagtggggg
gatgaagtgttcgagtcaggttggtctcgaggaacatccctctatgaatccatgagagga
aatgcgactgccacagttgaggctcttacctcacagctacgacagagagaaggagaagtc
caccaccttcacagtgaagtaacaaggtacgaggctcagcgtgagtccctagcgcaagag
cttgtctcaatgacgaggcagattgaaacacttcagaccaaagtgcaggactttgagaga
ctcaaggcacaatatacagacatggagcaaaaatacaatgctctgctacagatgcatgga
gagaaggtagaggaggtggaagaattacgtcttgacttggcagatgtgaaggagatgtat
aaggcgcagattgatgccctcctcagacaataa
DBGET
integrated database retrieval system
