Penaeus vannamei (Pacific white shrimp): 113824580
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Entry
113824580 CDS
T06111
Symbol
Prp8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113824580 (Prp8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113824580 (Prp8)
Spliceosome [BR:
pvm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113824580 (Prp8)
Complex C
U5 SnRNP specific factors
113824580 (Prp8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113824580
NCBI-ProteinID:
XP_027233131
LinkDB
All DBs
Position
9:31313374..31328889
Genome browser
AA seq
2374 aa
AA seq
DB search
MALPPYLIPGSPWAYMAQQQAQLAAAQAQAAHAQMHAHFQAQAQAQAQAQAIPRPQAGPP
PVENVSLEKMQEKARRWQQLHNKKYAEKRKFGFVDVQKEEMPPEHIRKIIRDHGDMSSRK
YRHDKRVYLGALKFMPHAVLKLLENMPMPWEQIRDVQVLYHITGAITFVNEIPWVIEPVY
IAQWSTMWMMMRREKRDRRHFKRMRFPPFDDEEPPLDFADNVLDVEPLEAIQMELDPEED
VEVAEWFYEHKPLIDTKHVNGPTYRKWRLTLPQMATLYRLANQLLTDVSDNNYFYLFDLK
SFFTAKALNMALPGGPKFEPLIKDMNPADEDWNEFNDINKIIVRHQVRTEYRIAFPYLFN
NMPQYVHLSWYHTPVVLYIKTEDPDLPAFYFDPLINPISHRNTVKGETLLPDDDEDFELP
EGVESLLKDWQLYDDATANGIALLWAPRPFNMRSGTMRRAIDVPLVKTWYREHCPPGQPV
KVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQTTTLDWVEVGLQVCRQGY
NMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDAH
VQYRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHVIYYRFNTGQV
GKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHF
DLELRASVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILR
YVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNMGRLTRLYLKSEQERQHNYQKDGPYI
SPEEAVAIYTTTVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQR
EELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAY
LDQYLWYEADKRRLFPPWVKPGDSEPPPLLVYKWCQGINNLTDVWDTADGECNVMLESKY
EKLYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVDINYKDMNHTNRYGIICGLQFASFIV
QYYGLVMDLLVLGLKRAADMAGPPQMPNDFLNFQDVATETQHPIRLYSRYIDRIHIFFRF
SAEEAKDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRL
PRSVTTVNWENSFVSVYSKDNPNLLFNMAGFECRILPKCRMTHEEFKHRDGVWNLQNEVT
KERTSQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYYRESVVNT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR
WSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWETEFLDSQRVWAEYALKRQEATAQNR
RLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHD
GKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNYSK
PSLLADSKDTMDGSTTQKYWIDVQLRWGDYDSHDVERYARAKFLDYTTDNMSLYPSPTGV
LIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEP
YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKI
IHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN
IVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKNISSYTAFSRLILILR
ALHVNNDRTKVLLKPDKTTITEPHHIWPSLSDEDWVKVEVQLKDLILADYGKKNNVNVAS
LTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSN
YETATFSSKTEWRVRAISATNLHLRTNYIYVSSDDIKETGFTYILPKNVLKKFIIISDLR
TQIAGYLYGVSPPDNPQVKEIRCIVMPPQWGTHQMVHLPHKLPGHEFLNELEPLGWIHTQ
PNELPQLSPHDITTHATIMADNTSWTTDRTIVITCSFTPGSCSLQAYKLTPSGFEWGRNN
KDMGNNPKGYLPSHYEKVQMLLSDRFLGLFMTPLQGSWNYNFMGVRHDPNMKYDLQLASP
KEFYHEVHRPAHFLNFSSLDEADTAGADRDNALE
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atggctttgcctccgtacctgatcccaggcagcccctgggcctatatggcacagcagcag
gcacagcttgctgctgcccaggcccaggctgctcatgctcagatgcatgctcacttccaa
gcccaagcgcaagcacaggcacaagcccaggccattccgcgtccacaggcaggcccacca
ccagtggaaaatgtgtcactggagaagatgcaggagaaagctcgaagatggcaacagctc
cacaacaaaaagtatgcagaaaaaagaaaatttggctttgtggatgtacagaaagaagaa
atgcctcctgagcacatccggaagatcattcgtgatcatggtgacatgtcaagcagaaag
taccgtcatgataagcgtgtttacttgggagcactgaagttcatgcctcatgctgtgttg
aagctgctggagaatatgcccatgccctgggaacaaataagagatgtgcaggtcctatac
cacatcactggggccatcacctttgtcaatgagatcccctgggtgattgagccagtatac
attgcccagtggtccaccatgtggatgatgatgaggcgagagaagcgagatcgtcggcat
ttcaagaggatgagattccctccctttgacgatgaagaaccccctctggattttgcagat
aacgtgcttgatgtagagcccttggaggctattcagatggaactagatcctgaggaagat
gtggaggttgctgagtggttctatgagcacaaacccctcatagacacaaaacatgtgaat
ggtcccacataccgcaagtggcggctgactctgccacaaatggcaactctatatagattg
gcaaaccagctgctcacagatgtgtcggataataactacttctatctctttgacttaaaa
tccttcttcacagcaaaggccctaaacatggcacttcctggtgggcccaagtttgagccc
ctgatcaaggacatgaacccagctgatgaggactggaatgagttcaatgacatcaacaaa
attatcgtgcgtcaccaggtgcgcactgagtaccgcatcgccttcccctacctcttcaac
aacatgcctcagtatgtgcatctcagttggtaccacacccctgtggtcttgtacatcaaa
acagaggatcctgaccttcctgccttctacttcgatcctctcatcaacccaatctcacat
cgtaacactgtcaaaggagagacactcctgcccgatgatgatgaggactttgagctgcca
gagggtgtggaatccctgctaaaggattggcagctgtatgatgatgcaactgcaaatgga
attgctctcctgtgggctccacgacccttcaacatgagatcaggcacaatgaggagagcc
attgatgtcccactggtgaagacctggtacagagagcactgcccacctggccagccagtt
aaggtccgagtgtcgtaccagaagctgttgaagtactacgtcctgaatgccttgaagcac
cgccccccaaaggcccagaagaagcgctacttgttccgttcattcaaggccaccaagttc
ttccagacaacaacactggattgggttgaggttggccttcaggtatgccggcagggatac
aacatgttgaacctcctgatccatcgcaagaatttgaattaccttcacttggattacaat
ttcaatctgaaaccagtcaagaccctcaccacaaaggagagaaagaagtctaggttcggt
aatgctttccatctgtgtcgtgagatcttgaggttgacaaagctggttgttgatgcccat
gttcagtacaggctgaacaatgtggatgccttccagctggctgatggtttgcaatatatt
tttgcccatgttggccagttgactggtatgtacaggtacaagtacaaactcatgaggcaa
atcaggatgtgcaaagatctgaagcatgtcatctactacaggtttaacactggtcaagtg
ggaaagggccctggatgtggtttctgggccccaggctggagggtctggctcttctttatg
agaggaatcacaccactcttggagcgttggctgggcaacctgctctcacgtcagttcgag
ggaagacacagcaagggtgtggcaaagactgtcaccaagcagcgagtagagtctcacttt
gatctagagttgagagcttctgtgatgcacgacatcctggacatgatgccagagggcatc
aagcagaacaaggctcgtacaattctccagcatctgtctgaagcctggaggtgctggaag
gcaaacatcccatggaaggtacctggactccccacccccattgagaacatgatccttcgc
tatgtgaaaatgaaggccgattggtggacaaacacagctcactacaaccgtgagagaatt
cgccgaggagcaacagtagacaagactgtgtgcaagaagaacatgggcagactgacacgt
ctgtatctgaaatcagagcaagaaaggcagcacaactaccagaaggatggtccttacatc
agtccagaagaagctgtggccatctacacaacaacagttcactggctggaatcacggcgt
tttgctcctatcccattcccacctctgtcatacaagcatgacaccaaactcctcattctg
gcactggagagactgaaagaagcatacagtgtcaagtcaaggttgaatcagtctcagcga
gaagagttgggtctcattgagcaggcttatgacaatcctcacgaagccctctcccgtatc
aagcgtcatctgcttactcagagagccttcaaggaagtgggcatagagttcatggatttg
tacagtcacctcattccagtgtatgatgtagaacctctggaaaagatcacagatgcatac
cttgatcagtacttgtggtacgaggcagacaagagacgacttttcccaccatgggtgaag
ccaggtgactctgagccacctcccttgcttgtgtacaaatggtgtcaaggaattaacaac
ctcactgatgtttgggacacagctgatggtgaatgcaatgtcatgcttgaatccaagtat
gagaaactgtatgagaagattgatcttacattgctcaacaggttgttgcgcttgattgtt
gaccacaacattgctgattacatgacagctaagaataacgttgacatcaactacaaggac
atgaaccacaccaaccgatatggtatcatctgtggattgcagtttgcctccttcattgtg
cagtattatggtttggtgatggatttgttagtcttgggtctcaagcgtgcagcagacatg
gctgggcccccacagatgcccaatgacttcctgaacttccaagatgttgccacagaaacc
cagcatcccatcaggttgtactcccgctacatcgacagaattcacattttcttccgcttc
tcagcagaagaggcaaaggacctcattcaaagatacttgacagagcatcctgatcccaat
aatgaaaacattgtaggctataacaacaagaagtgttggccaagggatgcaagaatgagg
ctgatgaaacatgatgtcaacttgggacgtgctgttttctgggacatcaagaatcgtttg
ccaaggtctgttacaactgtcaactgggaaaattcatttgtgtctgtttactccaaggac
aatccaaatctgcttttcaacatggctggctttgagtgccgcatcttgccaaagtgtcgc
atgacacatgaagagtttaaacacagagatggagtttggaatcttcagaatgaggttaca
aaggaacgtacctcacagtgcttcttgagagtagatgatgagtccatgcagagattccac
aatcgtgtcaggcagatcctcatggcttctggctcaacaactttcaccaagattgtgaac
aagtggaacactgctctgattggtcttatgacatactaccgagaatcagttgtcaacact
caggaactgcttgatctcctggtgaagtgtgagaacaaaattcagacacgtatcaagatt
ggcctgaactcaaaaatgccttccagattcccccctgtggtgttctacacacccaaggag
ttgggtggcctaggtatgttgtcaatgggtcacgtcttgatcccacagtctgatctgcga
tggagcaagcaaacagatgtaggcattactcacttcagatctggtatgagtcatgatgaa
gatcagctgattcccaatttgtacaggtatattcagccatgggaaacagaattcctggac
tcacagagagtatgggctgagtatgctctgaagaggcaagaggccactgctcagaataga
cgtctgaccctagaggatttggaagactcatgggatcgaggtatcccaagaatcaacaca
cttttccaaaaggatcgtcacacactggcctatgacaagggttggagaattagaactgaa
ttcaaacagtatcaagtccttaagcagaaccccttctggtggacacatcagcgccatgat
ggaaaactgtggaacctcaacaattaccgtactgacatgatccaagcgctgggtggtgta
gaaggtattctagagcacacactcttcaagggcacatacttccctacctgggagggtctc
ttctgggagaaggcatcaggatttgaagagagcatgaagtacaagaagctcactaacgcc
cagaggtcaggtttgaaccagattcccaaccgtcgcttcaccctctggtggtccccaacc
atcaacagggctaatgtgtatgtaggtttccaggtgcagctcgatctgactggtattttc
atgcacggtaagattcccaccctgaagatctctcttatccagattttccgtgcccatttg
tggcagaagatccatgagtctgtggtgatggacttgtgtcaggtattcgatcaagaactt
gatgcactagagattgagactgtgcagaaggagactattcatcccaggaagtcctataag
atgaattcatcttgtgctgacatcttgctctttgcagcctacaagtggaactactcaaaa
ccatcactgttagcagattccaaggacacaatggatggatcaacaacgcagaaatactgg
attgatgttcagctgaggtggggtgattatgattctcatgatgttgagcgatatgccaga
gccaaattcctcgactacaccacagataacatgtctctgtatccatccccaacaggtgtg
cttattgcaattgatcttgcttataacttgcacagtgcttatggaaattggttcccagga
gccaaacctcttatacagcaggcaatggcaaagatcatgaaggctaatcccgctttgtat
gtgttacgtgaacgcatccgcaaaggcctccaactttactcttccgagcccactgaacct
tacctctcatcccagaactatggagaattgttctccaatcagatcatctggtttgtagac
gatacaaatgtgtacagagtaaccattcacaagacctttgaaggcaacttgaccaccaag
cccattaatggagccattttcatcttcaaccctcgtacaggtcagcttttcttgaagatc
attcacacttcagtatgggctggccagaaacgtctgggtcagctcgccaagtggaagact
gctgaagaagttgctgccttgattaggtctctcccagtagaagaacagcctaagcagatt
attgtgacacgaaagggtatgttggatcctcttgaggtacatttactggatttcccaaac
attgtgatcaagggttctgagctgcagcttcctttccaagcttgtctcaaggtagagaag
tttggagacttgatcttaaaggctaccgagccccagatggtgctgtttaacctgtatgat
gattggctgaaaaacatctcttcatacacagctttctcccgtctcatcctgatccttcga
gctctgcatgtcaacaatgaccgaaccaaggttctcctcaaacctgacaagacgaccatt
acagaacctcaccacatctggccctcactaagtgatgaagattgggtcaaggtagaggta
cagctcaaggacctcattcttgctgattatggtaagaagaacaacgtgaacgttgcatca
ttaacacagtctgagattcgtgatatcattctgggtatggaaatcagtgccccctcagca
cagagacaacagattgccgagattgaaaaacaaaccaaggaacagtcccagctgacagcc
accacaacaagaactgtcaacaaacatggagatgaaatcattacttcaaccaccagtaac
tatgagacggcaacattcagcagcaagacagaatggagagtgagagctatctctgctaca
aatcttcatttgcgtacaaactacatctatgtgtcctcagatgacatcaaggaaactggt
tttacatacatcctgccaaagaatgtgttgaagaaattcatcattatatcagatcttagg
acacagattgcaggttatctctatggtgttagtcctccagataatccacaggtgaaggag
attcgttgcattgtgatgccaccacagtggggtactcaccagatggtgcatctacctcac
aagctacctgggcatgagttcctgaatgagctggagcctcttgggtggatccacacacag
cccaatgagttgccacagctctcccctcatgacatcaccacacatgctactatcatggca
gataacacaagttggaccacagaccgcaccattgtcattacttgctcattcaccccaggt
tcttgctccctacaggcatacaaactcacaccatcaggctttgaatggggacggaataat
aaggatatgggtaacaatcccaagggctacctgccatctcactacgagaaggtgcagatg
ttgctctctgaccgcttcttaggtcttttcatgacccctctccagggttcgtggaactat
aacttcatgggtgtccggcatgaccctaacatgaaatacgaccttcagcttgccagccca
aaagagttctaccatgaggttcatcgccctgctcacttcctcaatttctcctcacttgac
gaagctgacacagcaggagcagacagagacaatgcactagagtaa
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integrated database retrieval system
