KEGG   Penaeus vannamei (Pacific white shrimp): 113824618
Entry
113824618         CDS       T06111                                 
Symbol
Smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
pvm  Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:pvm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvm03041]
    113824618 (Smu1)
Spliceosome [BR:pvm03041]
 Complex B
  Other components
   Complex B specific factors
    113824618 (Smu1)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st LisH_TPL Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_NWD2_C Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Ge1_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F Beta-prop_EIPR1 Mala_s_1-like Beta-prop_BBS7 PROPPIN VPS8_N Beta-prop_LRRK2 VPS11_N Beta-prop_IFT122_2nd LisH_PAC1 DUF7165 WD40_like FlgD_ig
Other DBs
NCBI-GeneID: 113824618
NCBI-ProteinID: XP_027233181
LinkDB
Position
35:complement(23398427..23408100)
AA seq 513 aa
MSIEIESADVIRLIQQYLKENNLTRTLRALQEETSITLNTVDSVESFMADINQGHWDTVL
KAIQTLKLPDKKLIDLYEQVVLELIELRELGAAKSVLRNTDPLIMLKQTVPERYVHLENL
IARSYFDPREAYPEGVTKERRRAAIAAALAGEVSVVPPSRLLALLGQALKWQQHQGLLPP
GTQIDLFRGKAAMREQEEEKVPTQLARFIRFPQKAHVESAHFSPDGQYLVTGSFDGIIEV
WNFTTGKIRKDLKYQEKDSYMMMESAVLSLAFSRDSEMLSAGSQGGQVKVWRVSTGQCLR
KVERAHSEGVTSLAFNKDNSQVLSTSFDNTLRIHGLKSGKTLKEFRGHSSFVNQATFTQD
GHNIISASSDGTVKVWSVKTTECIATFKSLAGVTSVDLPVFSVHILPKNPDHIVVCNRSN
TVTIMNMQGQTVRSLSSGKREGGDFVSCVVSPRGEWIYCVGEDQVLYCFSTSTGKLERTL
NVHEQSVIGMCHHPHQNLLATFSEEGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgatagaaattgaatcggctgatgtgatcaggttgatccagcagtacctaaaggaa
aataacctgacacgaacactaagagctcttcaggaggaaacttccatcacactcaataca
gtggactctgtggagagcttcatggcagatatcaatcagggtcactgggatacagtgctc
aaggcaattcagactttgaaactcccagacaagaaacttattgacttgtatgaacaggtt
gttctagaactgatagagctgagagagttgggagctgccaagtcagtcctacgaaataca
gatcctcttatcatgttgaagcagactgtaccagagaggtatgttcatctggagaacctc
attgcccgttcatactttgatcctcgtgaagcatatcctgaaggagtaacaaaggagagg
aggagggcagccattgccgcagctctggcaggcgaagtgtcagtcgtaccgccatctcgt
ctcttagcccttcttggtcaggccctcaaatggcagcagcatcagggtctcctgccacct
ggtacccagattgatttgttccgaggtaaggcagccatgagggagcaagaggaggagaaa
gtacccacacagctggcaagatttatccgtttcccacagaaagcacatgttgagagtgca
cacttcagtcctgatggacagtaccttgtcacgggcagttttgatggcattatagaagta
tggaatttcaccacaggtaaaattcgtaaggatttaaagtatcaagaaaaggattcttac
atgatgatggaatctgctgtgctgagtttagcctttagcagagattctgaaatgctgtct
gctggctctcagggaggacaagttaaggtatggcgggtcagtacaggtcagtgcttgcgg
aaggtagaacgtgctcactcagagggtgtgacatcccttgccttcaacaaagataacagt
caagtattgtccacatcctttgataacacactcagaatacatggtttaaaatctggaaag
acgctaaaggagtttcgcggtcactcttcatttgtcaaccaagccacatttactcaggat
ggacacaatattatcagtgcatcatcagatggtactgtcaaagtctggtctgtcaaaacc
acagaatgtatagctaccttcaagtcactggctggtgtgacctcagtggatcttccagta
ttctctgtccacatcttaccgaagaacccagaccacatcgtagtgtgtaatcggtccaac
actgtgactattatgaacatgcaaggccagacagtcaggtcattgtcttcaggtaaaaga
gaaggtggtgacttcgtatcatgtgtcgtgtcaccacgcggagagtggatctattgtgtg
ggtgaggatcaggtgttatactgcttctctacttctacaggcaagctagagagaactttg
aatgtccatgagcagtctgtgattggtatgtgtcaccatccgcatcagaacttgttggcc
actttcagtgaagaaggtttactcaagctgtggaaaccttga

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