Penaeus vannamei (Pacific white shrimp): 113825158
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Entry
113825158 CDS
T06111
Name
(RefSeq) sex-determining region Y protein-like
KO
K23581
transcription factor SOX4 (SOX group C)
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvm03000
]
113825158
Transcription factors [BR:
pvm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113825158
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
ANKRD13_C
eIF-3_zeta
Motif
Other DBs
NCBI-GeneID:
113825158
NCBI-ProteinID:
XP_027233763
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Position
6:complement(42329817..42345899)
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AA seq
544 aa
AA seq
DB search
MLPQGLKEAPVEHPLSAGAPFGSLAVDDTSSTPYSDATQTKKHPPNHIKRPMNAFMVWSQ
MERREIVKFAPDTHNAEISKQLGRRWKLLTEEQRRPYREEAERLKQLHLREYPDYKYRPR
KKSKDPLKGVSERSGGKVAKVHQMNSICKEFASSIKTSGKDCAQAGKTGLPQGHQMDMQA
LDDPVGWSLPLTPTSPPRVPTSPTTSDLPDSPESAFNFDEHTFVRSTSLAPTQTYCARIE
SMTRSSAAFHSAVPNALASPGSRKAAATGGAFGGAPPRQPPFAPGFFPEQKLANGFLKHD
SLANMSYLKQEPEFAEQLLAHHRQQQQQQHEQEYHQTCLYSPVNSQTSFFGPALSAHADH
HHHHHQPHHHHHHHHHQQHQNHHPHHHQQQHHQHHQHHHHQQHHHQQQHQHQHQQQQQQQ
QQQQHQQQQRHQQQQQQQVPAVPVVKVEAPEAHPATLDDLDNIGVTELIPMTSDLKVELE
SLADLGYESGGSVGSGGGGGGGNGGGGNGGGGNGGSGWASVGAAASSPSNVLADFEIMNA
WINS
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgctgccccagggcctcaaggaagcgcccgtcgaacacccgctctccgccggcgccccc
ttcggctccctggcggtggatgacacttcgtcgacgccctactcggatgcgacacagacc
aagaagcaccctccgaaccacatcaagcgcccgatgaatgccttcatggtgtggtcgcag
atggagcgccgcgaaatagtgaaattcgcgcccgacacacacaacgccgagatctccaag
cagctggggcgccgctggaagctgctgacggaggagcagcgccgcccgtaccgcgaggag
gccgagcggctgaagcagctgcacctccgcgagtaccccgactacaagtaccgcccgcgc
aagaagtcgaaggacccgctgaagggcgtgtcggagcgcagcggcggcaaggtggccaag
gtgcaccagatgaacagcatctgcaaggagttcgccagcagcatcaagacgagcggcaag
gactgcgcgcaggcgggcaagaccggcctgccgcaggggcaccagatggacatgcaggcg
ctggacgaccccgtcgggtggtcgctgccgctcacgccgacgtcgccgccgcgcgtgccc
accagcccgaccacctccgacctgcccgactcgcccgagagcgccttcaacttcgacgag
cacaccttcgtcaggtcgacgtccttggcgccgacgcagacgtactgcgcgaggatcgag
agcatgacgcgctcgtccgccgccttccacagcgccgttccgaacgccctcgcgtcgccg
ggcagcagaaaggccgcggcgaccggcggcgctttcggcggcgcgcccccgagacagccg
cccttcgcgcccggcttcttccccgagcagaagctggccaacggcttcctcaagcacgat
tcgctcgccaacatgagttacctgaagcaagagccggagttcgccgagcagctgctggcc
caccaccgccagcagcagcagcagcagcacgagcaggagtaccaccagacgtgtctctac
tcgcccgtcaactcgcagacgtccttcttcgggccggccctttcggcgcacgcggaccac
caccaccaccaccaccagccacatcaccaccaccaccaccatcaccaccaacagcaccaa
aatcaccatcctcaccaccaccagcaacagcatcaccagcaccaccaacaccaccaccac
cagcaacaccaccaccaacagcaacatcaacaccagcaccaacaacaacaacagcaacag
cagcaacaacaacatcaacagcaacagcgacaccagcagcagcagcagcagcaggtcccg
gcggtccccgtggtcaaggtggaggccccggaggcgcacccggcgaccctcgacgacctc
gacaacatcggggtcacggagctcatccccatgacctctgacctgaaggtggagctcgag
tccctggccgacctgggctacgagtcgggcggctccgtcggcagcggcggcggcggcggc
ggagggaacggtggcggagggaacggcggcggcgggaacggcggcagcggctgggcgagc
gtgggcgcggccgcgtcgtcgccgtccaacgtgctggccgacttcgagatcatgaacgcc
tggatcaactcgtga
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