KEGG   Penaeus vannamei (Pacific white shrimp): 113825472
Entry
113825472         CDS       T06111                                 
Symbol
Prp38
Name
(RefSeq) pre-mRNA-splicing factor 38A
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
pvm  Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113825472 (Prp38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvm03041]
    113825472 (Prp38)
Spliceosome [BR:pvm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    113825472 (Prp38)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    113825472 (Prp38)
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 113825472
NCBI-ProteinID: XP_027234110
LinkDB
Position
35:2492487..2508925
AA seq 466 aa
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYDSRYWKEECFALTAELLVDKAMALRSIGGV
YGGNIKPTPFLCLVLKMLQIQPEKDIIIEFIKQDEFKYVRALGAFYLRIVYGSLDCYKYL
EPLLNDYRKLRLMDRSGQYQLSHMDEFIDSLLREERICDVILPRMQKRWVHEANNELEGR
VSLLDDDLDDLESESDDEEPLTPPPRPTRDMIEPSRTAPRDERHGRGHSPLRRSPGRDTR
NEREREKRHRSRSRSRDRDRGMERDRGMERDHGMERNRGADRDRGTDRDRGSDRDRGMDR
DRLMDRDRGMDRDRGMDRDRGMDRERMMDRDRGMDRDRGMDRDRGMDRDRQMERERKRHR
SRSRERRHRSRSRSPGHHTHHRERMRGEKDRDHRHGDRDKDRGDRDHGRERNRDRDRDRD
RSDRKEKHHRSGRSKRDNVSTMSREDLEIAEANALRAQLGLPPLRP
NT seq 1401 nt   +upstreamnt  +downstreamnt
atggccaaccgaaccgtcaaggatgcccactccatccatggcacaaatccgcaatattta
gtggagaaaattatccgaactcgcatatatgattcgaggtactggaaggaggaatgtttc
gccttgacagcggaactcttagtagacaaagcaatggccttgaggagcattggtggagtg
tatggtggaaatattaagcccactcccttcctgtgtctcgtgttgaagatgctccagatt
cagccagaaaaggatattataattgaatttattaagcaagatgaattcaaatacgttcgt
gcgctaggagctttttacttacggatagtatatgggtctttagattgctacaagtacttg
gagcctttgcttaatgactacagaaaacttcgtttgatggaccgctctggccagtatcag
ctctctcacatggatgaattcattgacagtttactgagagaagaacgtatttgtgatgta
attttacccagaatgcagaaaagatgggtgcatgaagccaacaatgaactggaaggaaga
gtttctttgttagatgatgacttggatgacttagaaagtgagagcgacgatgaagagcct
ctaacacccccacctcgtcctacaagagacatgattgaaccttcccggactgctcccaga
gatgagaggcatgggagaggtcactctcctctacgacggtctcctggcagagacacaaga
aatgaacgggaaagggaaaaaagacaccgcagtaggagccgttcacgtgacagagaccgt
ggcatggagcgtgataggggaatggaaagggatcatgggatggaaagaaatagaggagct
gacagggacagaggcacagatagagacaggggttcagatagagatagagggatggataga
gacagattaatggacagagatagaggcatggacagggatcgagggatggacagagatcgg
ggcatggatagggaacggatgatggatcgagatagaggtatggacagagacagaggtatg
gatcgggatagaggcatggatagagatagacaaatggaaagagagaggaaacgccatcgc
agtcgttcaagagaaagacgccaccgatcacgatcaagatctccaggtcaccatacacac
caccgtgagcgtatgcgaggagagaaggatagagaccaccgtcatggagatcgtgacaag
gatagaggagacagagatcatggaagagagcgaaatcgtgaccgtgacagagatcgcgat
cgcagcgaccgcaaagagaagcaccaccgcagtggacgcagtaagagggacaatgtctct
acaatgagtcgagaagacctagaaattgcagaagccaatgctctaagagcacagttagga
ttgccgccactgcgtccatag

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