Penaeus vannamei (Pacific white shrimp): 113825476
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Entry
113825476 CDS
T06111
Symbol
drosha
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113825476 (drosha)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113825476 (drosha)
03009 Ribosome biogenesis [BR:
pvm03009
]
113825476 (drosha)
03036 Chromosome and associated proteins [BR:
pvm03036
]
113825476 (drosha)
Enzymes [BR:
pvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
113825476 (drosha)
Messenger RNA biogenesis [BR:
pvm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
113825476 (drosha)
Ribosome biogenesis [BR:
pvm03009
]
Eukaryotic type
90S particles
RNase
113825476 (drosha)
Prokaryotic type
rRNA processing factors
113825476 (drosha)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
113825476 (drosha)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Motif
Other DBs
NCBI-GeneID:
113825476
NCBI-ProteinID:
XP_027234116
LinkDB
All DBs
Position
2:complement(41976692..41997644)
Genome browser
AA seq
1708 aa
AA seq
DB search
MSSGPSWAGGPACPQWPYVGPGNGAPPQWGASAGGMHQYPHNQPPPVNAPPQNWPNAHGP
PPMYGAPNQGMPEGAPPDHYAVAPQTSMPNQYNVPQHSVPPGPPSGTPSGLPSNGHFGPP
PVRSCPGPVGIPQCPSVGSSGPLSLTQFPPPGPSPGPPPGPGYVGTPMYGWGVSPPPSSQ
MVQTGQPPPGSAWGGVNPGDVHHQTWHGSDWDSERPHRPHTEDLTARSGIERSGVPSRNS
YRGNSRGRDHDSSIHGQERSSQVSSRTGYEDDRCSIDSGYKGSSRSYSDAYSSNGWRDRH
GRRRKRSRSPSEYSSRRIESRNRTEPRRCSRDSRERSRYDSDRKERYSRSPGSHSRSSSR
PLSPERKRSRPSWSPDRHKSRSPIKEIGGKRKKRSAVDLPPEEKEECESLPTIQEEEKSK
SVSKEEELEEEEDVKAAWVRSAPADLYYQRDEKNPLVMRATKKLMSLCEVVEEKLIMRGT
RLREEKRKAREKKEQQEQHQAIACRNGCLSLKKDKTKEQEGESKESPAENNAPENSTSTK
GKESGEECNGNSTKEAQEDVETANNSEVVSLEMEIVKNPSSEGMLCESVGVKCKHKHKHK
HRHINKENNDRDSEKGDSSSNSSSDSDSDNSSSSDDDDDDSEMDRIAKELEKKRNHPDRL
HPELWFNDPGEMNDGPLCRCSLKAQRSGIRHGYYVGEDSLKPCDPWTNNADHLHHYLITI
SPPTNFLIKTPTVIMHDSHEFIFEGFSLLSHNPLEEVPTCKVIRFNIEYTILYLQEKIPD
NFCVQELDIFYKYLFTELLELVDLNLHAMGDPDGCPRFHFMPRFVRKLADNGKEILSMNE
VLTYLLKNSGPLVQPEDLAQLLSMSQYQWQNYADQLKGMVVTCPGMKPCSIRVDQLDRDQ
VSEETINYPVIVHFGIRPPQLSYAGNPEYQKAWREYVKFRHLLANMPKPSFEDKRRLEAK
ENRLQEMRMTSKMKRDVTVAVSAQGFYRSGIMCDVVQHAMLLPVLVCHLRFHCSLEVLEE
RIQYKFRTRFLLQLALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRG
INTLINIMSRFGRNLETESKITHNERLEFLGDAVVEFLTSIHLFHLFPSLEEGGLATYRA
AIVQNQHLAVLAEKLGLDQFMLYAHGSDLCHDFELRHAMANCFEALMGAIFLDTGIEEAD
SVLSSTLFKGEDLLHSIWVNYPPHPIQMQEPQGDRKWIKSFPILTNLSKFEESIGVHFNH
IRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKYFPEHHEGHLSLLRSS
LVNNRTQAVVCDDLGMTAYAMYSHLKTELKTKDRADLLEAFLGALYIDRGLDYCRAFCQV
CFFPRLHQFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIYKVIECKGPTNTRVYTVAV
YFRGRRLAKASGHSIQQAEMNAAREALLNSKELFPQLDHQRRVIEKSVKIQGVSKLSSPH
RERDRGRDKDRERERSGRGYRREEERRGDKERGREREKQWEERHKEGERSRGGDNRGRVF
GERDQLGGDRDRDSERNKANERDKFSRERDRPGGERDRLTGERDRTLGERDRPYSDRSRS
TGDRKYKLMLEEDRRYRSEAEKIHDEREPAEESKLRACTKSMSRENADSDRNREKYKGYM
RMPSTEHHLKPTRNSRSDSSGKPSRSAW
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcggaccatcatgggcaggagggccagcatgcccccagtggccgtatgtagga
ccgggtaatggtgcaccaccacaatggggtgcttctgctggaggaatgcaccagtaccct
cacaaccagccacctcctgtaaatgcaccaccccaaaactggccaaatgctcatggtcct
ccccctatgtatggagcaccaaatcaaggcatgcctgaaggtgctcccccagatcactat
gcagtagctcctcagacctccatgccaaaccagtacaatgttccccagcacagtgtaccc
ccaggccctccctcaggcaccccctcgggcttgccatccaatgggcattttggtccccct
ccagttaggtcatgtcctggacctgttggcattcctcagtgcccttcagtgggctcatct
ggacccctttcgctgacccagtttccgcctccagggccttcacctggcccaccccctggc
cctggctatgttggaacccccatgtatgggtggggagtgtctcctcctccttcttcacaa
atggtgcaaactggccagcctccccctggctctgcttgggggggtgtcaatccaggggat
gtacatcaccaaacgtggcacgggtctgattgggattcagagagacctcatagacctcac
actgaagaccttacagctaggtcgggtattgagagaagtggcgtcccatcgagaaatagc
tacaggggcaatagcagagggagagaccatgactcctctatccatggccaagaaagatct
tctcaagtttcttcaaggacagggtatgaagatgatcgttgtagtatagactcaggatac
aagggaagtagtagaagctactctgatgcttactctagcaatggatggcgtgatagacac
ggcaggaggaggaaaagatcaagaagtccttctgagtactcgtctagaagaattgagtca
agaaatcgcacagagcctcgaaggtgttcaagggattctcgtgaaagatcgcggtatgac
agtgatcgtaaagaaaggtattcgaggagtcctggatctcattctcgttcaagttctcga
cctttgtccccagaaaggaagagatcacgtccctcctggagccctgacagacacaagtca
cgaagcccaatcaaagagataggtggcaaaagaaaaaaaaggagtgcggtggacctcccc
cccgaagagaaggaggaatgtgaatccctgccaacaatacaggaagaggagaagtctaaa
tcagtgtcaaaggaggaggaattagaggaagaagaggatgtgaaggctgcatgggtgcgc
tcagctcctgccgatctttattaccagcgtgatgagaagaatccattagtgatgcgtgca
acaaaaaaactgatgtcactttgtgaagtagttgaagaaaaattgataatgagaggcact
cgactacgagaagaaaagaggaaggcaagggaaaagaaggaacagcaagaacaacatcaa
gcaatagcctgcagaaatggatgtttgagcctgaaaaaggacaaaaccaaggaacaagaa
ggagagtccaaagaatcaccagcggagaataatgcaccagaaaacagcaccagcacaaag
ggcaaggagtcgggggaggaatgcaatggcaactccacaaaggaagctcaggaggatgtg
gagacagctaataattccgaggttgtttctttggagatggagatagtgaagaacccctct
tcagaaggcatgctatgtgaaagtgtaggagtcaagtgtaagcacaaacataagcacaaa
caccggcatataaacaaggagaacaatgacagagattcagaaaagggtgatagtagcagc
aacagcagtagtgatagtgatagtgacaatagcagtagtagtgatgatgatgatgatgac
agcgagatggacagaatcgctaaggagcttgagaagaaacgtaaccatcctgatcgcttg
catccagagctgtggtttaatgatcctggagaaatgaatgatggacctctttgccgatgc
tccttgaaggcccagcgctctggcatccgtcatgggtattatgttggagaagacagctta
aagccatgtgacccctggacaaataatgccgatcatcttcaccattatctcatcacaata
tctccacccactaatttcttgatcaagactcctactgtgattatgcatgatagccatgag
tttatatttgagggtttctcattgctatcacacaaccctcttgaagaagttcccacatgc
aaggtcatccgtttcaatattgagtacaccatcctctacctacaggaaaagatccctgat
aatttttgtgtccaagagctggacatattctataaatatctctttaccgaactattggaa
cttgtagacttgaacctccatgctatgggggatccagatggctgtccgcgattccatttt
atgccaagatttgtcaggaagttggcagataatggcaaggagatcctttcaatgaatgaa
gtgttaacatacttgctcaagaatagtgggccacttgtacaaccagaggatctagcacaa
cttttgagtatgtcccagtatcagtggcagaattatgctgatcagctaaaagggatggtg
gtcacgtgtcctggcatgaagccctgcagcatccgcgttgaccagctagacagagaccag
gtcagcgaggagaccatcaattatccggtcattgtccatttcgggatccggcctccgcag
ctttcctatgccgggaatccagagtaccagaaggcatggagggaatacgtaaaatttcgg
cacctgctagccaacatgcccaagccgtcatttgaggacaagaggagactagaggccaag
gagaaccgcttgcaggaaatgcggatgacctccaagatgaagcgagatgtgactgttgct
gtctctgcgcagggattctaccgatctgggattatgtgtgatgttgtccagcatgccatg
ttgctccccgtgttggtgtgtcacctgcgcttccactgttcattagaggtcctcgaggag
agaattcagtacaaattccgcacaagattcctcctgcaattggctcttactcatccctcc
tacagagaaaactttggcacaaatcctgatcatgcccgaaactcactcacaaattgtgga
atacggcagcctgaatacggggacagaagaatccattatatgaatacacgcaaaagaggc
ataaacacgctgataaacatcatgtctcgtttcggacgcaaccttgagacggaaagtaaa
atcacacacaacgaacggctggagttccttggtgatgctgtggtagagttcttaacctcc
attcacttgttccacctctttcccagtctagaggaaggtggcttggcaacatacagggca
gctattgtccagaaccaacatctagcagtgttagcagagaagcttgggctggaccagttt
atgctatacgctcatgggtcagatctgtgtcatgatttcgagctgcgtcatgcaatggcc
aactgctttgaggctctcatgggagccatttttcttgatactggaatagaggaagcagac
agtgttctaagttcaaccctgtttaaaggtgaggatttgttgcacagcatctgggtcaac
tacccccctcacccaatacaaatgcaagagccacagggggacaggaagtggatcaaatcg
ttcccaatccttactaatttatccaagtttgaggagtccatcggcgtgcactttaaccac
attcgcctattggctcgagccttcactgaccgcagcattggcttcaacaaccttactctg
ggatcaaatcagcgactggagttcttaggagacacagtccttcagttggtggcatctgag
tacttatataaatattttcctgagcatcatgaaggtcacctctcattgctccgttcatcg
ctggttaacaaccggacccaagctgtggtatgtgatgacttgggtatgacagcatatgca
atgtattcacacttgaagacagaattgaaaacaaaagatcgtgctgatttgctggaagca
tttcttggggccctctacattgataggggtctagactactgccgcgccttctgccaggtg
tgtttcttcccacggctgcaccaattcatcatgaaccaggattggaacgatcccaagagc
aaattgcagcagtgttgcttgaccctaaggactatggatggaggggaacctgacattccc
atttacaaagttatcgagtgcaaaggacccaccaacacacgtgtgtacactgtggctgtc
tatttccgaggacgacgtttggccaaggcgtcgggccattcgattcagcaagcagagatg
aatgcagctcgagaggctctacttaactccaaagagctgttcccgcagctggaccaccaa
cgaagagtcatcgagaagagcgtcaagatccagggcgtttcgaagcttagctcgccgcac
agggaaagagaccggggcagagacaaagaccgtgaaagggagaggtctggacggggatac
aggagagaggaggaaagacgaggagataaggagcgcggtagagaaagggagaaacaatgg
gaggagagacataaagaaggagaaagaagcagaggtggagacaatagaggccgagtgttt
ggggagagggatcagctgggcggagatagggatagagacagcgagagaaataaggcgaat
gagagggacaaatttagcagagaaagggacaggccaggtggggagagagaccgactgact
ggcgagagagacaggacattaggggagagagacaggccatacagtgaccgaagcagaagt
accggagatcggaaatataagttaatgttagaggaggacaggaggtacagatcagaggca
gagaaaatacacgacgaaagggaaccagctgaagaatcgaagttgcgtgcatgtacgaag
agcatgtcgagagaaaatgctgactcggaccgtaaccgagagaagtataagggctacatg
agaatgccatcgaccgagcaccacctaaagccaaccaggaattcgaggagcgattcgagt
gggaaaccctcgcggtcagcttggtaa
DBGET
integrated database retrieval system
