Penaeus vannamei (Pacific white shrimp): 113825835
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Entry
113825835 CDS
T06111
Symbol
Atg18a
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 2
KO
K17908
autophagy-related protein 18
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04136
Autophagy - other
pvm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113825835 (Atg18a)
04136 Autophagy - other
113825835 (Atg18a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvm04131
]
113825835 (Atg18a)
03029 Mitochondrial biogenesis [BR:
pvm03029
]
113825835 (Atg18a)
Membrane trafficking [BR:
pvm04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
113825835 (Atg18a)
Mitochondrial biogenesis [BR:
pvm03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
113825835 (Atg18a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
WD40
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
BCAS3_WD40
DUF7165
EIF3I
Beta-prop_WDR35_TULP_N
VID27
DUF7099
PQQ
Beta-prop_Vps41
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
113825835
NCBI-ProteinID:
XP_069971272
LinkDB
All DBs
Position
37:27780896..27788323
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AA seq
485 aa
AA seq
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MVSLTSSVGVVTSGVGVVTSGVRAGIAGLMSLAAQGGADPVAAPGGVFSVNFNQDFSSLG
VGTKTGYKLFSLNSVDKVEQICDNVNEDTCIVERLFSSSLVAVVSLSSPRKLKVCHFKKN
SEICNYSYPNTILAVKLNRARLVVCLEESLYIHNIRDMKVLHTIRDTPPNPMGLCALSIS
NDNCYLAYPGSNSIGQVQIFDAQNLQAKTMIPAHDSPLAAIAFNATGTKVATASEKGTVI
RVFNVSDGARLHELRRGMKRCATIFSLAFSPDALFLIASSNTETVHVFKLEEVKDTQRVV
VEEQPGLMGWMSKAVSASASYLPAPVTDMLSQGRAFATITLPFQGIRNVCAIATIQKHPR
VVVASTDGYLYIYNLNTTEGGDCTLLKQHRLDGSGEGSSPGSEGGPVLGPYPGGAKKTEP
VSTTGGSYAGVVKGPSAGVMTGSTSADTLPPRTQDSDKMSEMAAACESPPKSVLKFDDDS
EFPPV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcctgacatcgagcgtgggcgtagtgacctctggtgtgggcgtggtgacctct
ggagtgcgggcgggcatcgctgggctcatgagtctagcagcacaggggggcgcagacccc
gtggctgcccccgggggagtcttctccgtcaacttcaaccaggacttctcgtcacttgga
gttggaacgaagacggggtataaacttttttccctaaatagtgtggacaaagtagaacaa
atatgtgataatgtaaatgaagacacgtgcattgtagaacggctcttctcaagcagcctg
gtcgctgtagttagtttatcctctccgcgcaaactaaaagtatgccacttcaagaaaaat
tccgagatatgcaactacagttatcccaacaccattcttgcggtcaagctcaaccgggca
cgactggttgtctgcttagaagagtccctatatatccacaacatccgcgacatgaaggtt
ctccacaccatccgtgacaccccgccgaaccccatgggtctctgcgctctttccattagc
aatgacaactgttacttagcgtaccctggttctaactccattggccaggtccagatcttc
gatgctcaaaatctgcaagcaaaaacgatgattcctgctcacgatagccctcttgctgcc
attgccttcaatgccactggtactaaggtcgccacagcttcagagaaaggcacagtgata
cgtgtcttcaatgtgtctgatggagcccgactgcacgaactgcggcggggcatgaagcgg
tgcgccaccatcttttccttagccttctcacctgatgcactcttcctcattgcctcctcc
aatactgagacagtccatgtcttcaaactcgaggaggtcaaggatacgcaacgtgtagtg
gtagaggagcagcccggactaatgggctggatgagtaaagcagtgagtgcgtcggccagc
tacttaccagccccagtgacggacatgctgagtcagggccgtgcctttgccaccatcaca
cttcccttccaggggatacggaatgtttgtgccatagcaacgattcagaaacaccctcga
gtagttgtagcatcaactgatggttacttgtacatttacaacctaaatactactgaggga
ggtgactgcacattattgaaacaacacaggcttgacggaagcggtgaggggagcagtccg
ggaagtgagggaggccctgtgttgggaccataccctggaggcgccaagaagacagaacca
gtgagcacgaccggaggcagctatgcaggagtggtgaagggaccatctgctggagtcatg
acaggtagtacatccgcggacactcttccccctcgcacgcaggattcagacaaaatgagc
gaaatggcggcagcgtgcgaatctcccccaaagagtgtccttaagtttgatgatgattcg
gagttcccgcctgtgtaa
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