Penaeus vannamei (Pacific white shrimp): 113826830
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Entry
113826830 CDS
T06111
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113826830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113826830
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113826830
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
113826830
NCBI-ProteinID:
XP_027235519
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All DBs
Position
8:1890834..1902689
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AA seq
423 aa
AA seq
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MADVQDEDQWLYGDEKDESKEDGEINERTGEEADRAGQENDQEKETPMEEGGGKDGEEKD
GEDKDGDKDKEGDKEDGEKGDDDDSSDDDDLTVTIGTIKTQPDIIQAAPHGARFQPKAAP
TTGLKDEDFTSPGKVNGVPVTEFNLDDLEDKPWRKPGADISDYFNYGFNEETWFKYCERQ
KRMRIQESGAGLTGLGISVTKPFGNTPSSIPVAIVNDNSKYGGSGSQRPKAGPPPRNKGM
GQIDVIGGASNPKTSTIQVMTADRREYSNKVMMNGPPPPLPPSQPGYNDMEFGGNPYGDT
YYGNEGNNFYGGGSYDNPSGWGSGGQPPMGNQGNWEGQGGGGGAPPNVLPVSGGGGYFDE
DSVGAPPPSAEPEEERHRSRRSHRSRSRSPSRHRHSSRHPRSRSRSPSHRHKRKKSKRER
DTD
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtgcaggacgaggaccagtggctctacggcgacgagaaggacgagtccaaa
gaggatggcgaaataaacgagagaacaggggaggaggcggatagagcgggacaggaaaat
gatcaggagaaggaaaccccaatggaagagggaggagggaaggacggtgaggagaaggat
ggagaagacaaagatggtgataaagacaaagaaggtgacaaggaagatggtgagaaagga
gacgatgatgacagtagtgacgatgatgacttgacagtgaccattggtacgatcaagacc
cagccagacattattcaggcggctccacatggtgcgaggttccagcctaaggctgcgcca
accacaggcctaaaggatgaggatttcacatcgcctgggaaagtgaatggtgttccagtg
acagaatttaaccttgacgacttggaagataaaccttggagaaagcctggtgctgacatt
tcggattacttcaactatggcttcaatgaagagacatggttcaaatactgcgagagacag
aagaggatgcgaattcaggaatcaggtgctggcttgacgggtctcggcatcagtgtgact
aagccttttggtaacactcccagcagtatcccagtagccattgtaaatgataacagcaaa
tatggaggttcaggctcccaacggccgaaggcaggcccacctccacgcaacaaaggcatg
ggtcagattgacgtcattgggggtgcttcaaaccccaagaccagcacgatacaggtcatg
acggctgatagacgagaatactccaacaaggtaatgatgaatgggcctcctccacctttg
cctccgtcacaaccaggatataacgatatggaatttggaggtaacccgtatggtgacacc
tactatggcaacgagggcaacaacttctacggaggtggttcctatgacaacccctctggg
tggggctcagggggacagcctcccatgggcaaccagggcaactgggaaggccaaggggga
ggaggaggagcaccgccaaatgtgctgccggtgtcaggcggtggagggtacttcgatgag
gactctgtaggggcgcctcccccatccgcagaacccgaggaggagagacaccgatcccga
agaagccacagatcacgcagccgttccccaagtcgacacagacactcgagcagacaccca
agatcgcgttccagatcaccttcccatagacacaagagaaagaagtcaaagagagaacgc
gacaccgattag
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