Penaeus vannamei (Pacific white shrimp): 113827072
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Entry
113827072 CDS
T06111
Name
(RefSeq) collagen alpha-2(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113827072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pvm00536
]
113827072
Glycosaminoglycan binding proteins [BR:
pvm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113827072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113827072
NCBI-ProteinID:
XP_069998270
LinkDB
All DBs
Position
29:complement(3883170..3938982)
Genome browser
AA seq
1715 aa
AA seq
DB search
MDRAQRLRLILQGLIWAWIYRHTDAAGGSLLEALGVAQQPMGVEQTRGMCDDRAGQGPDT
AFKVTKQTVLTVPTAQLFKDQFPEDFSIMATLRPDQGSSSVLFGLYSDAGDDQLLVEVGD
TVKLFYQDEEGKPKGGNDLEFGVAINDGKWHRLGLSVKGNSITLLVDCETNTTLLLRRPS
PSHVSNAGIILLGQQLLEEKYFAGDIQQLDIVSGPEAAYEHCDYYMPECDWELPASLSAG
QTQFEYVDRTEEQLVYNEEEFVADNVTGLDTSGLEYPPPRILRGHPGPQGPPGPMGPKGD
PGRDGIPGTDGVSGPPGHVFMIPLNIDANNKGPDAMVQQLQSMLSQHMDAMRGADGPMGL
TGLPGPEGPPGETGYKGEPGEVGEPGPRGLRGNMGMAGRMGRRGRPGRDGERGLSGIPGS
KGEPGLRGLPGIPGDKGHRGPVGMTGPVGLPGHEGMPGEAGTPGVPGLPGEMGPRGFIGP
RGFPGLPGPPGIPGSEGTTGPKGSNGPPGQPGPPGQAGPLGAIGPPGPQGLIGPPGPAGP
RGKPGLAGLPGADGLPGHPGNPGIVGSKGDKGPVGPQGTLGFPGPRGVKGDQGNRGMQGE
KGSKGDLGPDGEKGDIGPKGERGEVGPEGQTGLEGPEGPKGFEGPRGETGPPGPNGEKGK
LGVQGFPGYPGPPGDKGDKGSPGLTGRTGDKGERGNVGLPGERGEQGPRGFRGSRGRRGK
MGLNGPKGDTGQPGPPGPIGEQGPQGPEGPRGFAGPAGPPGVDGKDGIMGPPGERGPPGE
AGNQGAPGPPGVVGPMGSAGEPGPTGDPGPAGTSGVPGEPGRPGEAGKEGAPGPMGPAGK
TGPVGPPGPPGFPGERGLPGIPGATGLKGEMGPPGPAGSTGDKGAMGLAGEAGPQGPMGK
TGPRGSRGSSGAKGESGDPGVPGPTGRDGLPGPRGLPGPPGPVGEPGEDGDKGEAGSPGE
KGFKGDKGNQGPAGPPGPQGLRGAPGAPGAPGERGSPGGMGHAGRKGEDGPQGLPGPTGP
PGLQGLPGPSGVKGEKGDIGKRGLPGPLGPIGEQGVPGSKGGPGLPGPNGPDGPQGAKGD
PGQTGPPGPPGKDGEHGREGPAGPKGEEGKPGLQGSPGIRGPIGPPGPKGNAGPPGFPGA
VGEPGKQGPKGNPGKDGDDGKVGEPGPPGEPGSPGQMGLPGSNGKPGPEGPAGVQGPPGQ
PGEKGDTGTTGPVGPPGATGPQGLPGPEGLPGLRGSPGPAGDLGLPGKDGAPGQPGLPGL
PGLKGQKGSRGRRGPKGHRGEIGISGPKGDMGEKGEPGKNGPQGPSGFKGEPGPLGILGM
KGSDGPQGLPGDIGPPGPKGVPGATGPKGEQGPSGPPGPPGPPGELPLLPPELLFQRDAP
YDPDDSGRFKRSPRGSDDCRIGEVCDDTPEDDISPSVPAGGRGRAGGRRRRPPSAVPVDR
RRKNRRRGGYKAREAVQSDVDTRREAVDEAKKPGVTRSETDDFDMTMLDMYTNIYTMRQD
LERLKKPIGTKENPARTCKDLYYGYPKFKDGWYWIDPNLGMPDDAVYVFCNMTVEGETCV
FPDVRSSKIINIPWRRSARDDAWFSDLRGGFTITYETTGVVQMNFLRLLSSYAYQNFTYS
CLQSKAWFDQENLNHNKAIKLMGQDEQIFSIDTLQPNVLTDGCAASKGVSQDKSRTVFEV
RTETLSHLPLVDFQPTDYGLPNQAFGFEAGPVCFK
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacagggcccagcgcctgcgcctcattcttcagggcctcatttgggcatggatctac
cggcatacagatgcggcggggggcagtctgttggaggcgctgggcgtggctcagcagccg
atgggcgtggagcagacccgggggatgtgcgacgaccgtgcaggtcagggccccgacacc
gccttcaaggtcaccaagcagactgtcctcaccgtcccgacggcgcagctctttaaagac
caatttcccgaagactttagcatcatggccaccctgagacccgaccaaggctcgagctcc
gtgttgttcggcttgtactcggacgccggcgacgaccagctcctggtggaggtgggcgac
accgtcaagctcttctaccaggacgaggaggggaagcccaagggaggcaacgacctggag
ttcggcgtcgcgatcaacgacgggaagtggcatcgcctcgggctcagcgtgaagggaaac
agcatcactctcctggtggactgcgagaccaacaccaccctgctcctccgccgcccgtcg
ccgtcgcacgtgtccaacgccggcatcatcctcctcggccaacagctcctcgaggagaag
tacttcgccggcgacatccaacagctggacatcgtgtcgggcccggaggccgcctacgag
cactgcgactactacatgcccgaatgcgactgggagctgccagcctcgctcagcgccggc
cagacgcagttcgagtacgtggacaggaccgaagaacagctggtctacaacgaggaggaa
ttcgttgcggacaacgtcacgggtttggacaccagcgggctggagtaccctccgccgcgc
atcctgcggggccacccaggaccccagggccccccgggacccatggggcccaagggcgac
ccaggccgcgacggaatcccgggcactgacggcgtctcagggccgcccggtcacgtgttc
atgatcccgctcaacatcgacgccaacaacaagggaccggacgccatggtgcagcagctg
cagagcatgctgtcgcagcacatggatgccatgcgcggcgccgacggccccatgggcctc
acggggctgccgggtcccgagggcccgcctggtgagaccgggtacaagggcgagcccggg
gaggtcggagaaccgggtcctcgaggcttgcggggcaatatgggcatggctggccgcatg
gggcgccgcgggcggccggggcgcgacggcgagcgaggtctgtcgggcatcccggggtcc
aagggcgagccgggcctgcgcggcctgccaggtatacctggtgacaagggtcaccgaggt
cccgtcggcatgacaggacctgtcggtctgccgggtcacgagggaatgcctggcgaggcc
gggacgcccggtgtcccaggtctccccggagagatgggtccacgaggcttcatcggcccc
cgaggcttccctgggcttccaggacctccagggatcccaggcagcgagggcaccacgggg
ccgaagggcagcaacggcccaccgggacaacctggtccgcctggccaagccggccccctc
ggcgcgatcggcccacccggccctcagggcttaatcggtccacctggccccgcgggtccc
cgaggcaagcctggcttggccggccttccgggcgccgacggcctccccggccaccccggc
aacccgggcatcgtaggatccaagggagacaaagggccggtcgggccgcagggaaccctc
ggcttccctgggccgcgcggggtcaagggcgaccaagggaaccgcgggatgcagggcgag
aagggcagcaagggcgacctgggccccgacggagagaagggagacatcggccccaagggc
gagcgaggcgaggtcggacccgagggacagactggcctcgagggccccgaaggacccaag
ggcttcgaagggccgcggggcgagacgggacccccgggccccaacggcgagaagggcaag
ctcggagtgcagggcttcccagggtacccaggtccccccggggataagggtgacaagggc
tcgccggggctgacgggtcgaacgggtgacaagggcgagcgcgggaacgtcggtctgccc
ggcgaacggggcgagcagggccccaggggcttccgaggctcccgcggccgccgaggaaag
atgggtctgaacggccccaagggcgacaccggccagccaggcccccccgggcccattggc
gagcagggtccccagggtcccgagggccctaggggcttcgctggtcccgctgggccacct
ggcgtcgacggcaaggacggcatcatggggcccccgggagagcgcggtcctccgggcgaa
gctgggaaccaaggagcacctgggcctccgggcgtggttggccccatgggttccgccggc
gagcctggccccaccggagatcctggtcctgccggtacatcgggcgtgccaggggaaccc
ggaaggccgggcgaggcgggcaaggagggcgctccgggtcccatgggtcctgcaggaaag
acgggccccgtgggtcctccaggtccgccgggcttcccaggagagcgaggcttgccgggc
atccccggagcaacgggcctgaagggcgagatgggacccccagggccagccggatccacc
ggggacaagggcgccatgggcttggccggcgaggcaggcccacaaggacccatgggcaag
accggacctcgaggcagccgcggttcatccggagccaagggagagagtggagatccaggc
gtacccggaccgactgggcgcgatggtctccccggaccgagaggtctacctggcccccct
ggccctgtcggcgaaccgggcgaggacggcgacaagggcgaggctggttcaccgggagag
aagggcttcaagggcgacaagggcaaccaaggtcccgcagggcctccaggtcctcagggt
ctgcgaggtgcacctggagccccgggagcacccggtgaacgcggttcccccggcggtatg
ggccatgctggccgcaagggcgaggacggcccacagggtcttcctggcccgaccggacca
cccggcctccagggcctgcctggtccctccggcgtcaagggcgagaagggagacatcggc
aagagaggcctccccggccccctcggccccatcggcgagcaaggcgtccccggaagcaag
ggcggccctggcctcccaggacccaacgggcccgacggcccccagggtgccaagggagat
ccaggccagaccggcccacccggtccacccggcaaagacggcgaacacggacgcgaagga
cctgccggacccaagggcgaggagggcaagccagggctccagggatccccgggcattcgt
ggcccgatcggtccgcccggccccaagggcaacgccggcccacccggcttccccggcgcc
gtgggagaacccggcaagcaagggcctaagggcaaccccggcaaggacggcgacgacggc
aaggtcggagagccagggccccccggggagcccggctcacccggccagatggggctcccg
ggcagcaacggaaagccgggtcctgaggggccggctggcgtgcaggggcccccagggcag
ccgggagagaaaggagacacgggcacgactggacctgtggggcctccgggtgccactggg
ccccagggtcttcctggacctgaggggctgcctggcttgcgaggatctcctggacctgct
ggcgacctgggtcttccgggcaaggacggagccccagggcaaccaggtcttccaggtctc
ccgggtctcaagggccagaagggctcccgaggccgccgcgggccgaagggacaccgcgga
gagatcggcatttccggccccaagggcgacatgggcgagaagggcgagcccggcaagaac
gggccgcaaggtccatctggcttcaagggcgaacccgggcctttgggcatcttaggcatg
aagggttcggatggaccccagggtctgccaggtgacatcggacctcccgggcccaagggc
gtgcctggagcaactggccccaaaggagaacagggtccttcaggtcctccaggtcctccg
ggtcctccaggagaactgccgttgcttcctccggagctcctcttccagcgcgatgctccc
tacgatcctgacgactctggccgcttcaagaggtcgccaagaggctcggacgactgtagg
ataggcgaagtgtgtgacgacacccctgaagatgacatctccccctcagtgcccgctggg
gggagaggtcgagcaggtggtaggagacgcagaccaccctcagccgtcccagtggataga
cgacgcaagaatcggcggagaggaggttacaaggctagggaagctgtgcagagtgacgtg
gacaccagaagggaggccgtcgacgaggccaagaagcccggcgtcactcgcagcgagacc
gacgacttcgacatgacgatgctcgacatgtacaccaacatctacaccatgcggcaggac
ctcgagcgcctcaagaagcccatcggcaccaaggagaacccggccaggacgtgcaaggac
ctctactacggatacccgaagttcaaggacggctggtactggatcgacccgaacctcggc
atgcctgacgacgctgtctacgtgttctgcaacatgaccgtagagggcgagacgtgcgtg
ttccccgacgtcaggtcctccaagatcatcaacatcccctggaggaggtcggcgagggac
gatgcctggttctccgacctgagaggcggcttcacgatcacgtacgagacgacgggcgtg
gtccagatgaacttcctgcgcctcctgtcctcctacgcctaccagaacttcacgtactcc
tgcctccagtctaaagcttggtttgaccaggagaacctcaaccacaataaagccatcaag
ctcatgggacaagatgaacagatattttccatcgatacacttcagccgaatgttctcacg
gatgggtgtgctgcctcgaaaggcgtctcgcaggacaagtcccggaccgtcttcgaggtg
cgcacggagaccctctcccatcttcccctcgtcgacttccagcccacggactacggcctg
cccaaccaggcgtttgggttcgaggcagggcccgtctgcttcaagtag
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integrated database retrieval system
