Penaeus vannamei (Pacific white shrimp): 113827178
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Entry
113827178 CDS
T06111
Symbol
Vps50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvm04131
]
113827178 (Vps50)
Membrane trafficking [BR:
pvm04131
]
Protein recycling
Others
EARP complex
113827178 (Vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Utp13
Motif
Other DBs
NCBI-GeneID:
113827178
NCBI-ProteinID:
XP_027235908
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All DBs
Position
22:4309970..4320071
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AA seq
956 aa
AA seq
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MDIKEKFKSFMDKQKISLKAPSSQAQLGESVKSDDFEGRMAVTGDLYRKSSLLNDHILTP
EAEKAVIDSIESLYFESGDVDVGEHELKKFPQDVDIHVINGMRSRLRKQHAIVSRRVSDL
IMQKQGLCSEEMEKVVELQKEIYKEIGLCVEGRRKLAQGRSQFTSASLGILANYSKRQKI
ASVIRSLRTVRTLQMTDVQLQNLLKAEDYPGAIQLLLECQKAAATFKHFTCISELSTKLQ
DTLEGAEEQLDVALAKVAANFNAANYEKLQIAYGLLGKTQTLMDQLHMHLTSHIHNSAFT
IVLGYVELYNSVNGGNGSISGSSFSKMQYSELCKYVNEESFLPCLMDLSKSMWNVLKSYR
SIILWHEENEKASQEEVNNESQDAEEAATSRRYTKQKLEHGLYRIWQDVQAKVRTFILAS
DLCHFKFDDFLRILDVINKLIDVGECFCGSKSETLRESIKKQSINYFRTHHRARMEELHM
FLENEGWEACPVKSTFSIYQLMEFRFLKGRDLSFTRMSTPSSSPVKKSSSSSDKRDLFDL
FNSDSSPFDIATEETVEEDIMANGEAGDSIHISDDDSEDDEELMKDFVDEQTGEAPQPHT
RRKFDHSKAPIVTNTTLTILRLIGKYIQMMRLLQPIAFDVMVCLSHLFDYYLYTVFMFFG
ERGELEQNLSRRLRTSLKRIQDTLILTSEVPQEEPTDQDKVPSPSISPVVDTTSAESIYG
LPVRVVAVESLAFLAVQLEALHCHIEPLIPQQRRTFLQQFYTGTVKITPEIRHHVYTAVA
SQVIDYDGILNRMSNVKWDINDLMSQHSQYVDVLLRQLQVLSMKLEEVSRVSPIPAEAYN
ALWECIVRITNRTLLEGFASARRCTNEGRSLMQLDYQQFLMKLECLTKVRPLPDKHLVET
FIKAYYLPEGALEEWVQQNGTDYSPRQLNALMSTMTHVNKRTRQKISNLVEEQCRR
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaaagagaagttcaagtcgttcatggataaacagaagatcagcctgaaggca
ccatcatcgcaagcacagttaggagagagcgtaaaatccgatgacttcgaaggaagaatg
gctgtgacgggggatttatataggaagtccagcctcttgaatgatcacatactaacacct
gaagcagagaaagccgtgatagacagcatcgagagcctttatttcgagagcggggacgtc
gacgtaggtgaacacgaacttaagaaattcccacaggacgtagacattcatgtgattaac
gggatgaggtctagactaaggaagcagcacgccatagtgtctcgaagggtgtctgatctc
attatgcagaagcaagggctgtgcagcgaggagatggagaaggtcgtggagctgcagaag
gagatttacaaggagattggcctgtgcgttgaaggccggaggaagctggcccaggggagg
agtcagttcacatcagctagtcttgggattttagccaactacagtaagcggcagaagatt
gccagtgttatccggtcacttaggacagtcaggacgttacagatgacagatgtccaatta
cagaatttgttaaaagcagaagattaccctggggccattcaattactgcttgagtgccag
aaagctgcagcgacttttaagcattttacttgtatctctgaactcagtaccaagttacag
gatactcttgagggtgcagaggagcagctagatgttgccttagctaaagttgctgctaat
ttcaatgctgctaattatgagaaattgcagattgcatatggtctcttggggaaaacacag
acactcatggaccagttacacatgcaccttacatctcatatccacaattcagccttcacg
attgttcttggctatgtagagttgtataatagtgttaatggtggaaatggtagtatctcc
ggctcatcattctcaaagatgcaatattcggaactatgcaaatatgtaaatgaggaaagc
ttcctcccatgtctcatggatctaagcaaatccatgtggaacgtcctaaagagttaccgc
agcattatcttgtggcatgaggaaaatgagaaggcctcccaggaggaagtgaataatgaa
agtcaagatgctgaggaagctgcaacatccagacgctacacaaagcaaaaactagagcat
ggactgtacagaatatggcaagatgtgcaggcaaaagtccggacctttatcctggcgtca
gacctctgtcacttcaaatttgatgatttcctgagaattttggatgtcatcaacaagctc
attgatgttggtgagtgcttctgtggcagcaaatcagaaacgctcagagaatcaattaag
aagcaatcaatcaactacttccgcacacaccacagagcaagaatggaggaattacacatg
tttttggagaatgaagggtgggaggcatgtccggtgaagtcaacgttctcaatatatcag
ctgatggagtttaggttccttaagggaagggacctaagcttcacaagaatgtctactcca
agttcttcaccggttaaaaagtcaagcagcagctcagacaagagggacctctttgacctc
ttcaacagcgatagctcaccatttgacattgctacagaagagacagtcgaggaggacatc
atggccaatggagaagctggggattctattcacataagtgatgatgacagtgaggatgat
gaggagttgatgaaggatttcgtagatgagcagacaggggaagctccgcagccacatacc
aggcggaaatttgaccacagcaaggcacccatagtcacaaatacaacccttacaatccta
cggctcattgggaaatacatccagatgatgagattgctgcagcctatagcctttgatgtc
atggtgtgcctcagtcatctcttcgactattacctgtatacagtcttcatgttctttggg
gaaaggggagaactggaacagaatctcagcagacgacttcgaacgtctctcaaaaggatc
caggacacgttgattctcacttcagaggtgcctcaggaggagcccactgatcaggacaag
gtgccaagtccctccatatccccagtagtagacacaacctcagcagaaagcatatatggg
ctgccagtgcgggtggtggctgtggagagccttgcgttcctggcagtgcagctggaggcc
ttgcactgccacattgaacctctcattccacagcagaggagaacatttttgcagcagttc
tacacaggcactgtcaagatcacccctgagattcgccaccatgtttacacagctgtagcc
tctcaagtgatagactacgatggtattttgaaccgcatgtccaatgtcaagtgggatata
aatgacctcatgagccagcacagccagtatgtcgatgtcctactgagacaacttcaggtt
ttgagcatgaagttagaggaagttagcagagtatccccaataccagcagaggcatacaat
gcactctgggaatgtatagtacgcataacgaaccgcactttgttagagggttttgcttct
gctcgaaggtgcaccaacgagggacgatcactgatgcaacttgactatcagcaattcctc
atgaaacttgagtgcctaaccaaggtgcgcccgctacccgataagcacctggtggaaaca
ttcatcaaagcctactacctgcctgaaggagcgctggaggagtgggtgcaacagaatggc
accgactactctcccaggcagctgaatgcccttatgtccaccatgacgcacgtgaacaag
cgcacccggcagaagatctccaatctggtcgaggagcagtgtaggaggtga
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