Penaeus vannamei (Pacific white shrimp): 113828616
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Entry
113828616 CDS
T06111
Symbol
mus101
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113828616 (mus101)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvm03032
]
113828616 (mus101)
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113828616 (mus101)
DNA replication proteins [BR:
pvm03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
113828616 (mus101)
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113828616 (mus101)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
TopBP1_BRCT0
BRCT_TopB1_SLF1
BRCT_3
ECT2_BRCT0
DapB_N
Motif
Other DBs
NCBI-GeneID:
113828616
NCBI-ProteinID:
XP_027237420
LinkDB
All DBs
Position
36:5475114..5502797
Genome browser
AA seq
1469 aa
AA seq
DB search
MEVTVCSQDGEVSLNFILPEGLTEETCSTSLVCAYQACQENGLNPVWLPSADCIKLSPTK
QDVFVCDPFEGEAFKHLTEGGFKCVRVLGPRCLLTCLHRKEPIPELPSPIHNTAMKGMVV
TTTGFEKDVKAELQMLVERMAAIYSNNFHEGVTHLVANAVGSKKYIVAVEKEIPVMTGEW
VQAVWKAVNRDFREDILATDQQFLSYTCPVFKGLVICVSQMHRKEKDALMKMIQDNGGTY
SGSLEMAVTSVLIIPTPEGEKYTHACNWRIQCLTPDWIYDSVEQGHALDMEGYKVKKTRG
ASTPTNDMSVNDGKNTSRRASFLSVPPDVSMCSTIMNETDAMKVTHINETLQMDTSIAIK
KNSAFDEKVNRGIEAVEELDLQQAMKAGLFLDGCKIFLSGFSGTHIEKLRRILNAGGATR
FNQLTDSVSHVVIGKIVDEHLTTIQSWPSKPHLVYGDWITESIKQKRPADEAQFAHLSDG
SGCSSNSPKPPRRPPRVPVPSQQQENNETYVDEAIINQYLKPGAKLDDTRNVSLNETANM
SALPDSQTTFVQGMFSGKIFTVSGYNEEVLEDLITTIQDHGGEVVSQDYKGRVHYTLTNL
DGTGEVHANANEIISHFFIEECLENEGLLDVEYYHMPLVVSRQMNCLEDCTVAISTYKGK
ERLFLVTVANALGARFQEVFAKKDNRAKDIKTSTHLICPSAEGDKYRAAVKWGVPAVTRD
WLIECIQTGEREPEDSYKVDNKNRREVNYKEIIRNLILKGHSDEQSSTVYRVEETVAGDI
TEVVATPMNHKVRALREQGNVASPSDIKTPDLETMRRLYPTPGVGKGNETLNDMPTPDTP
YGSTWFPNPSSRVRKGFKRMLDSIPDAPVVKKRATENGTPMNVLYKKFFNNVQETLDSHE
QKFSQRMAANEQGKEEHQSGKKERKDSNEEQGGDETVAADNHGPLTGVVVCTARKLQDQQ
RELYKTVAELGGDYRWAYDHSVTHFVYQGRHNDTNKEFRLAREQGKLIVAPEWVHMCRDE
ETRIDESLFPHTHNPKMSLSILSAKTTPVSKRGRPRKKPLDDTSPDLQEKECEEQDTSHS
NESENESGDTANDEEQKKAAISRQLEEIEALATVTGSGRRSAGSARNRSLGEKLKHTPTR
PIQVEAHPATMEVAESQNTAITWDDPQEREARLHLQNQLTKDTQEIISAREQHDETVYFE
EDKENTPSQDESAEESTVIPHKTKKRTYLIILSGMPEDEKNRYSDIVESLGGLLSQEQNH
DPKGTHVVTAKPSRSEKHLAAIASGKWMLYISFLEESMKLGHFVEEEPHEWGNPEATFLP
KLQPGSLETKLATAAHRWRLAIQDMPAGDARRGAFCHMRALVHSSKERTAAFIRLIQAGG
GEIVLGKPPYKDVTDVTHFFVEANKNPAKFDLAKFAADQVPCLAPVFLNEYLVKDPVPDE
MEHCIPEYKEIVASMSKADQSLIRRTRKR
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcaccgtttgctcacaggatggagaagtgagtctcaactttatccttcccgag
ggactgacagaagaaacatgttcgacgagccttgtgtgtgcctaccaggcttgtcaggag
aatggattgaacccagtttggcttccgtcagccgactgtatcaaactctccccaaccaag
caagatgtctttgtctgtgatcccttcgaaggagaagctttcaagcacttgacagaaggt
ggttttaagtgtgtcagagtcctgggtccacgatgcctcctgacctgcctccaccgcaag
gagcccatccccgagctcccgtctccgatccacaacacagccatgaaagggatggttgtc
actaccactgggtttgaaaaggacgttaaggccgagctgcagatgctagtggagaggatg
gcggcgatctattccaacaactttcacgagggtgtgacgcacctggtggcaaatgctgtg
gggagcaagaagtatattgtggctgtggaaaaggagatcccagtgatgactggtgagtgg
gtgcaggcagtatggaaggctgtaaatcgggattttcgagaagacatccttgccacagat
cagcagtttttgtcctacacttgccctgtctttaaaggcctggtcatctgtgtgtcccag
atgcaccgcaaggaaaaggatgctcttatgaaaatgatccaagacaatggtgggacgtat
tcgggtagcttggagatggccgttacctcagtcctgatcatccctaccccggaaggcgag
aaatacacccatgcatgcaattggcgcatccagtgcctcaccccagactggatctacgac
tctgtggaacagggacatgcacttgacatggagggctataaggtgaagaagacacgcgga
gcctccactcctaccaacgatatgtcggtgaatgacggcaaaaatacatcaagacgggct
tctttcttgtcggttcccccagatgtgtccatgtgcagtaccatcatgaacgagacggat
gccatgaaggttacccatatcaatgagaccttacaaatggacacctccattgcaatcaag
aagaacagtgcctttgatgagaaagtaaaccgtggcatagaagcagtcgaagagctggac
ctgcagcaggccatgaaggcgggtctgttcctggatggctgcaagatcttcctctctggc
ttcagtggcacgcacattgagaagctgagacgcatcctcaatgctggtggggcaacgcgc
ttcaatcagctaacagactccgtgtctcatgttgttatagggaagattgtagatgagcac
ctcacgacaattcagtcatggccctcgaagccccacctagtgtatggtgactggatcaca
gagagcatcaagcagaaacgccctgcagatgaggcacagtttgcccacctttctgatggc
agcggctgcagcagcaactcccccaaaccaccacgaagacctcctagggtcccggtgcct
tcccaacaacaggagaacaacgagacatatgtggatgaggcgatcatcaatcagtacctg
aagccaggagccaaattagacgacacaaggaatgttagtctgaatgagacggctaacatg
tcagctctccctgactcgcaaacaacatttgtgcaggggatgtttagcggcaagatcttc
actgtctcaggctacaacgaggaagtcctggaggacctgataaccaccattcaggaccat
ggcggggaggtagtgtcccaagactacaagggccgtgtccactataccctcaccaacctg
gatgggacgggggaggttcacgccaacgccaatgagatcatctcgcacttcttcattgag
gagtgcttggagaatgagggcctccttgacgtggagtactaccacatgcctctcgtagtt
agcagacagatgaactgcttggaagactgcactgttgcaatatcaacgtataagggcaaa
gagcgcctttttctggtcactgttgcaaatgcacttggggcaaggttccaagaagtgttt
gccaagaaggacaaccgtgccaaggacattaagacatcaacacacctcatttgtccaagt
gccgagggagacaagtaccgggcagctgtcaagtggggggttccggctgtcacaagggac
tggctgatcgaatgcatacagactggggagagggagcccgaggactcgtataaagtggac
aacaagaaccggcgagaggtcaactacaaggaaattatcaggaatttgatcttgaaagga
cactcggatgaacaaagcagcacagtgtaccgtgtggaagaaactgtagctggggatatc
actgaggtagtagctacacccatgaatcacaaggtgcgggcattgagggaacaggggaat
gtcgcatcaccttcggatatcaagacgccagacctggagaccatgagaagattgtacccc
accccaggagtagggaagggcaacgaaaccttgaatgatatgccaacacctgacactcca
tatggaagcacgtggtttccaaacccttcttcccgtgtgaggaaaggcttcaaaagaatg
ctggactcgatcccagatgcgcctgtggtaaagaagcgtgccacagagaatggtacccca
atgaatgttctctacaaaaagttcttcaacaatgtccaggagacattagacagccatgaa
caaaagttctctcagaggatggcagctaatgaacaagggaaggaagaacatcagagtggc
aagaaagagaggaaagatagcaatgaagaacaaggaggagatgagactgtggcagctgac
aaccatggccctctgacaggggtggtggtgtgcacagcccgcaagcttcaggatcagcaa
cgtgagctgtacaaaactgtagcggagctaggtggggactaccgctgggcctatgaccat
tcagtaacacattttgtgtaccagggacgccacaatgacactaacaaggaatttcgcctg
gcgcgagagcagggcaaactaattgtggcaccagagtgggttcacatgtgccgtgatgag
gagaccaggattgatgagagcctgttccctcacacgcacaaccccaagatgtccctgtcc
atcttgagtgccaagactacaccagtgtctaagcggggcaggcctaggaaaaagccctta
gatgacacatcaccagacctccaggagaaggagtgtgaggaacaggataccagtcacagc
aatgagagtgagaatgagagtggtgatacggccaatgatgaagagcagaagaaagcagca
atctccaggcagctggaggagattgaagcattggccacagtgaccgggtcgggcagaagg
agtgcgggcagtgccaggaataggtccttgggtgagaagctgaaacacacacctacacgc
cccattcaagtggaggcacatccagcgactatggaagtggctgagtcacagaacacagcc
atcacgtgggacgatccccaagagcgagaagccagactgcacctccagaaccaactcacc
aaagacacgcaggaaatcatcagtgcaagagaacagcacgatgaaactgtctacttcgag
gaggacaaggagaacacgcccagtcaggatgagtcagctgaagagtccacggtcatcccc
cacaagaccaagaagaggacctacctcattatcctgtcgggcatgccagaggatgagaag
aaccgctactcggatattgtggagagcttgggtggtttgctaagccaggaacagaaccat
gacccaaagggtacccacgtggtcacagccaagccctcacgctcggagaagcacctggca
gccatcgcttcggggaagtggatgctgtacatctcgttcttggaggagtcaatgaagtta
gggcactttgtcgaggaggaaccacatgaatggggcaacccggaagctaccttcttgccc
aagctccagcctggaagccttgagacgaagctggccactgcagcccacagatggcgcctt
gcaatccaggacatgccggcaggggatgctcgaaggggagccttctgccacatgagggcc
cttgtccactcgagtaaagagaggacagcagcgtttataagactcatccaggctggggga
ggagaaattgttcttggaaagcctccttacaaggacgtgactgacgttacccatttcttc
gtggaagccaacaagaacccggctaagtttgacctggccaagtttgcagctgaccaggtt
ccctgcttagcccccgtcttcctcaacgagtacctagtcaaggacccggttcctgatgag
atggagcactgcattcctgagtacaaggagattgtagcaagtatgagtaaggcagatcaa
tctctcattagaaggacaaggaaacggtaa
DBGET
integrated database retrieval system
