Penaeus vannamei (Pacific white shrimp): 113828619
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Entry
113828619 CDS
T06111
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113828619
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113828619
Spliceosome [BR:
pvm03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
113828619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_30
AAA_19
HVO_2753_ZBP
Motif
Other DBs
NCBI-GeneID:
113828619
NCBI-ProteinID:
XP_027237424
LinkDB
All DBs
Position
34:complement(7470268..7475737)
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AA seq
950 aa
AA seq
DB search
MATKKAHTISDRERTDDIHVEENVDFASMYLSDHVLEGLKKSGFIRPSPIQLAAIPLGRC
GLDLVVQAKSGTGKTCVFTVVALEMLSVTASTTQVLVIAPTREIAVQITQVINSIGIGTP
GLRAYAFIGGIALSQDKAKLSCCHIAVGTPGRLAQLVELGLLKLDNVRLLVLDEADQLLT
GQFTKGVTSLASALPLNKQILALSATYTDEVAKVAEELMRSPNHVRLGRDCPALLGVNQF
ARLLPFHHQPHRIQQTKMSELLSVLSTVTFNQCLVFTNSQLRAESICNELRATGWPVSYL
TGGQAQRDRLQALDALCSYKCRILISTDLSARGLDSEHVNLVINLDMPRDQATYLHRVGR
AGRFGSRGGAITLATEGDDWTAMRAIVTLANVKAYLLQEGWDSNITSKEVEGMEEVEMLG
EEELNLWLEVSMKKGFSRDQQVMKSIQNGNVGERITESVGKRSNSKLEIHDESEKENLKD
KSVRKKGHKQNKTIVKQESKSDKPDDHGKGDVRNTKETINDDLSCKKESNPEEVAKKAIE
KKAENLKIVSALLSKVSSSFHKFSYAEIYKELSEKHDTESVSSTITIPSLPDRLNPSESE
LKVLCDHIEDTNEDLENKIASIDTFWKSSKVDIKEALQALIEGKDPSLLPHSNDCKESCS
DLTEHINLLEPDENGLSPETAVSTHEVNGITLTADCADKVTESSLSERESKVNTDSVSGL
YQSSKSTTQSTSELCSSKKTSNSRGNKEKVLKSQEIKQTVKKSRSHHKQSQEDLEMRREP
KSKKVQKKLTKRPTSTSTDTSFESSSSTDCHYQQSYNGYYDSQQQQRDYWSQMHGMYSAG
YQQYAQTDYPSYGGAYQNFQPPGGEGGAQWSQQQQNYYTGYPYEWDYYTMSAYNHKRAYI
ESAQKFASMMDYVQSMGRMSAWIARDYHSRNSQNSYKCDKCFKKSTNKQS
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaaaaagcacacactattagtgaccgagaacgaactgacgacatacatgta
gaggaaaatgtggattttgcaagtatgtacttgtctgatcatgtgttggagggactgaag
aaatctggatttatcaggccaagtcccatccaactcgctgctattccacttggtcgctgt
gggcttgaccttgtggttcaggccaagagtggaacaggcaagacatgtgtatttactgtt
gttgctctggagatgctcagtgttacagcctcaaccactcaagtattggtcatagcacca
acaagggagatagcagtgcagatcactcaagtaatcaattccataggcattggaacacca
gggttgagggcttatgcctttataggtggcattgctctgtcacaggataaagcaaagctc
agctgttgtcatatagctgtgggcacaccaggacgtttagcacagttggttgaacttggt
ctcctaaagcttgataatgttcgcctgcttgtccttgatgaagctgatcagttgctgaca
ggtcagtttacaaaaggagtgaccagtctagcctcagcactccctttgaataaacaaata
ttagcattaagtgctacatatacagatgaagttgcaaaagttgcagaagagctgatgcgt
tctccaaatcatgttcgccttgggagagattgtcctgctcttcttggtgtgaatcagttt
gcacggctgcttcccttccatcatcaaccgcatagaatacagcaaaccaaaatgtctgag
ttgttgtcagtattatcaacggtaacattcaaccagtgccttgtctttactaattctcag
ttacgtgctgaatcaatttgtaatgaattaagagcaactggatggccagtatcataccta
acaggtggccaagcacaaagagatcgtttacaggcacttgatgctctctgctcttacaag
tgtcgtatccttatatccacagacctctctgcccgaggtttagattctgaacatgtcaat
ctagtgataaatctagacatgccacgggatcaggccacttacttacatcgagttggacga
gcaggacgcttcggttctcgaggaggtgccatcacactggctactgagggggatgactgg
acagctatgagagctattgtgacgcttgccaatgtgaaagcttatttacttcaagagggc
tgggactccaatatcactagtaaagaggtagaaggtatggaggaagtagagatgctgggg
gaagaggaactgaatctatggcttgaggtaagcatgaaaaaaggcttttcacgagaccaa
caagttatgaagagtatacaaaatgggaatgtaggagagagaataactgagtcagtaggg
aaaagatctaattcaaaactagaaatacatgatgaatctgaaaaagaaaatctgaaggat
aagtcagtgagaaaaaaaggtcacaagcagaataagacaattgtaaaacaggaaagtaaa
agtgataaaccagatgatcatggaaagggtgatgtaaggaatacaaaggaaactataaat
gatgatctatcatgtaagaaagaaagcaatcctgaagaagtggcaaaaaaagcaatagaa
aagaaagcagaaaacctgaaaatcgtttcagcccttcttagtaaggtaagctcttccttt
cataagttttcatatgcagagatttacaaggaactgtcagagaaacatgacacagaaagt
gtttcttcaacaattactattccatccttgcctgatagactgaatccatctgaatcagag
ctgaaggttctctgtgaccacatagaggacactaatgaggaccttgaaaacaaaattgca
agtatagatacattctggaagtcctcaaaagttgatataaaagaagcacttcaggcttta
attgaaggaaaagatccaagtttgcttcctcacagcaatgattgtaaagaatcttgcagt
gatttgacagagcatataaatcttttagagccagatgaaaatggattatccccagaaaca
gctgtatcaacacatgaagttaacggcattacacttactgctgattgtgctgacaaagta
acagagagttcgttgtcagagagggagagtaaagtcaacacagattctgtcagtgggtta
tatcagtcttccaagagcacaactcagtctacctcagaactgtgttcctcaaagaagacc
agtaattcaagaggaaacaaagaaaaagtactcaagtctcaagaaataaaacaaacggta
aagaagtcaaggtcacaccataaacaatcacaagaagatttagaaatgagaagagaacca
aagtctaaaaaggtacaaaagaagctaacaaagaggcccacatctaccagcacagacact
tcttttgagagtagctcaagcactgattgtcattaccagcaaagttataatggatattat
gatagtcaacagcagcaaagggattattggagccagatgcatggtatgtatagtgcaggt
tatcagcaatatgcacagacagattatccttcatatggaggagcttaccagaatttccag
ccaccaggaggagaaggaggagcgcagtggagccagcagcagcagaactattatacaggt
tatccttatgaatgggactactacactatgagtgcctacaatcataagagagcttacatt
gagagtgctcagaagtttgcctcaatgatggattatgttcagagcatgggacgaatgagt
gcatggatagcccgtgactatcattcacgcaatagccaaaatagttataaatgtgataag
tgctttaaaaaaagcactaataagcaaagttag
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