Penaeus vannamei (Pacific white shrimp): 113828622
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Entry
113828622 CDS
T06111
Symbol
Xpd
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03022
Basal transcription factors
pvm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113828622 (Xpd)
09124 Replication and repair
03420 Nucleotide excision repair
113828622 (Xpd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvm03021
]
113828622 (Xpd)
03036 Chromosome and associated proteins [BR:
pvm03036
]
113828622 (Xpd)
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113828622 (Xpd)
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113828622 (Xpd)
Transcription machinery [BR:
pvm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113828622 (Xpd)
Chromosome and associated proteins [BR:
pvm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113828622 (Xpd)
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113828622 (Xpd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
DEAD
ResIII
nSTAND3
BrxL_N
DUF5872
Motif
Other DBs
NCBI-GeneID:
113828622
NCBI-ProteinID:
XP_027237428
LinkDB
All DBs
Position
42:complement(13518495..13532252)
Genome browser
AA seq
758 aa
AA seq
DB search
MLLDVDGMQVFFPYDFIYPEQYSYMLDLKRSLDAKGHCILEMPSGTGKTITLLSLIVSYL
RAFPQNLTKLIYCSRTIPELEKVIAELKKLKNYIEKETGEPANITGLALASRKHLCVNPE
VSKAREGKLVDNGCYALTASYVRSRAQRDDTVPQCDYFEQFDLHGKEFPLPAGTYNLDDL
REFGRQKGWCPYFLARHAIVQANIVVYSYHYMLDPKISEIVSKEMKSEACVVFDEAHNID
NICIDSMSININRRVLDKAKTSLNSLHEHISRIKESDSNRLRDEYSRLVEGLRRASNQEH
IVANPILPKDLLEENVPGNIRTADYFVSFMRRLIDFLKMRLAVTHAVQESPAGILKDLKN
RAFIDRKPLRFCSERLSSIVRTLELTDISDISPLVAVAHFATLVSTYLQGFVVIIEPFED
KAPNIPNPILYLRCLDSSLAIKPVFTKFQTVVITSGTLSPLDMYPKILDFHPVIQNSFTM
TLARPCILPMIVTKGNDQVAISSKFESREDPAVVRNYGKLLVEMGTIVPDGMVCFFTSYL
YLESVVATWYDHGIISDLQRHKLVFIETQDDAETSLALLNYMKACDKGRGAILLAVARGK
VSEGIDFDHHYGRCVIMMGIPFMYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQC
VGRVMRGKTDYGIMLFADKRFSRADKKSKLPRWIQEYLVDSKCNLSTEEAVQVTRPWLRQ
MAQPFTRDDQLGVSLLTLEQLNSASNIEKVQKRAQQSF
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggacgttgatggcatgcaggttttcttcccctatgacttcatctacccagaa
cagtattcttacatgttagacctaaagagaagtcttgatgctaagggacactgcatactg
gagatgccttcggggacaggcaagaccattacgctgctgtcgctcattgtgtcctacctc
cgagctttcccgcagaatctcacaaagctcatttactgctcccgaactattccggagctg
gaaaaggtaattgcagagttgaagaagctcaagaactacattgaaaaggagactggagaa
cctgcaaacatcactggccttgcattagcctccagaaagcacctgtgtgtgaatcctgag
gtcagtaaggcaagggaaggaaagcttgttgacaatggatgctatgctctgacagcctca
tatgtaagatccagggcccagagagatgacacagtgccacagtgtgactactttgaacag
tttgatctccatggcaaggaatttcccctgccagcaggcacatacaaccttgatgacttg
cgggagtttggcagacagaagggatggtgcccatacttcttggccaggcatgcaatagta
caagcaaatatcgtagtctacagctaccattacatgctggatccaaagatttccgaaata
gtatcgaaagagatgaagagcgaagcttgtgttgttttcgatgaggctcacaacattgac
aatatttgcattgactccatgagtataaatattaatagaagagtactggataaggccaaa
accagtcttaacagcttacatgaacatatatcaaggataaaggagtctgacagcaacagg
ttaagagatgaatatagtcgtcttgtggaagggctacggcgtgcttctaaccaagagcat
attgtagcaaatcctatcctgccaaaagatttattagaagaaaatgtccctgggaacatc
aggacagccgattactttgtctcattcatgcggcgcttgattgacttcctgaaaatgagg
ttggctgtcacacatgcggtccaggagtcgccagctggtatcctgaaggatctgaaaaac
agagccttcattgatcgaaaacccctgaggttttgctctgaacgcctctcctccattgta
agaacgttagagttgactgatatatcagacatctcaccccttgtagctgttgctcacttt
gccacccttgtctccacatacttgcagggttttgtcgtcattattgagccctttgaagac
aaggctccaaatattcccaatccaatattgtacttgaggtgtttggattcgtcgcttgca
atcaaaccagtcttcacaaagttccagacagttgtcattacctctggaactctttcaccg
ttggacatgtatcctaagatcttggacttccaccctgtgatccagaattctttcaccatg
acacttgctagaccttgtattcttccaatgattgtgaccaagggcaatgaccaagtggcc
atctcatccaagtttgagtccagagaagatccagctgttgtcagaaattatgggaagctt
ttagtagaaatgggaacaattgtacctgatggaatggtgtgtttcttcacatcttacctg
tacctggagagtgtagtggctacgtggtatgaccatggtatcatcagtgacctacagagg
cacaaactggttttcatcgagacccaagatgatgccgagacatctctggctcttctgaac
tatatgaaagcatgtgacaagggacggggagcaatcctgctggctgtggcgcgaggcaaa
gtgtcggaagggatcgatttcgaccatcactatggccgctgtgtcattatgatgggaatt
ccattcatgtacacccagagcaggattctaaaggccagattagaatacttgcgtgaccag
tttaatattcgtgaaaatgacttcctgaccttcgatgccatgcgtcatgcagctcagtgt
gtgggtcgagtcatgcgtggaaagaccgactatggaatcatgttgttcgcagataaacgt
ttctccagggctgataagaagagcaaattgcctcgttggattcaagagtatttagttgac
agcaagtgtaatttgtctacggaggaagctgttcaggtgacaagaccatggctgcgtcag
atggcccagcctttcacaagagacgatcagctgggagtgtcactgctgaccctcgaacag
ctcaactcggcctctaacatcgagaaagtacaaaagagagctcagcaatctttttaa
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