Penaeus vannamei (Pacific white shrimp): 113829292
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Entry
113829292 CDS
T06111
Symbol
RNaseZ
Name
(RefSeq) ribonuclease Z, mitochondrial isoform X1
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvm03016
]
113829292 (RNaseZ)
Enzymes [BR:
pvm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
113829292 (RNaseZ)
Transfer RNA biogenesis [BR:
pvm03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
113829292 (RNaseZ)
Prokaryotic type
113829292 (RNaseZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Anti-Pycsar_Apyc1
Lactamase_B_4
Lactamase_B_2
Lactamase_B
RecT
Motif
Other DBs
NCBI-GeneID:
113829292
NCBI-ProteinID:
XP_027238231
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All DBs
Position
8:33875219..33886583
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AA seq
922 aa
AA seq
DB search
MSITIASAAFGQRTKYVLMSVRICNQIHKLKPRIPSSYYSRDTVFAGSIAARKVHTCLSL
QKSKNSRNANSNSKVYELLKTMPKKIDVKELQELRLARRKKVRKYPPSTVYLQVLGSGAP
GAPKSLYVFTEQARYLFNCGEGSQRLAYEHRVKLSMMEHILITHKSWSNVGGLPGILLTL
QDTGVPEISLHGPPGIESLYYDTRHFIRFRDLNIKYKHYKEGDGVIGESNDPLNIQAVPI
WAKKDESSAEKSEETTDEITNEREDAVEDLYAHEKPLMKKRQFVNANTNPARRRQNQEES
KLCKDLSIAYVCRPPPKAGALLLEKCVKAGITPGPLLGELKRGKDVTLEDGRVVFAADVT
APDDPGPIFIVIEIPTEAYLDSLLECPTFMQYQPSEASDSDLAEVVVHFTPSHVMANPRY
QEWMSRFSPSTNHIIANDASSCMGSEAVHRLQYKLNHLSEDLFPLLQDKSIPITEEDQQE
SNDDNTTENVFSNDEKSSEKENVESNSLPKHIVGPTHQAHTLLMYHIRPKKKIDRSNRLM
LKPQTYVKECYEEEKFEPALLSAKAKLESTNLKEHQEKSTNQNYPDVIFLGTGSCIPNKT
RNTSGLLVNISANKTLLMDCGEGTYGQLVRLLGLDEADQALRNLAAVYVSHLHADHHIGF
INILLGRRKAFQRAGITKIPKLPLLAPQKILAYLISYHANFEPVLQDFSLIANHNFLAQN
FTLEKDRYEELCSQLDMKKIDMTYVIHCPNSFGVAWTHVDGWKLVYSGDTMPCSGLVEIG
QNCNLLIHEATMEDELEDDARIKTHSTTSQAIQVGRDMNAENILLTHFSQRYAKVPLFED
DLPEKVGIAFDNMRVAFKNLPKLRHLYGALVAMFSDDYDEMLEKTAKKRAARENLRLQLE
EFSNKEEIQGNKRVKQDQSIVL
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataacaattgcatcagcggcctttgggcagaggacaaagtatgtgttaatgtca
gtgagaatatgtaaccaaatacacaagctcaagcctaggataccttcctcttattattca
agagacacagtatttgcgggttccattgcagcgagaaaagtacatacgtgtttatccctc
cagaagagcaagaactcacgcaacgccaactcaaatagcaaggtttacgaattgctgaag
acaatgccaaagaagattgatgtgaaagagttgcaagaactacgtcttgcacgacgaaag
aaggtacggaagtatccaccttctacagtatatctgcaagttttaggatctggtgctcca
ggtgctcccaagtctctctatgtcttcacagagcaagcaaggtatttgtttaactgtggt
gaaggatcccagagacttgcctatgaacacagagtaaaactgagtatgatggagcacatt
ttaatcacacacaagtcttggagtaatgttggtgggctgccaggaatcctcctgacactt
caagacactggagttccagagatctctcttcatggacctccaggcattgaatccttatac
tatgatacccgtcattttataaggttcagggacctgaatatcaaatacaagcattataaa
gaaggtgatggggtgattggggaatccaatgatcccctaaacatccaggcagttcccatc
tgggccaagaaggacgagtcttcagctgagaagagtgaagaaactacagacgaaatcaca
aatgagagagaggatgcagtggaagatctttatgcacatgaaaaaccattgatgaaaaag
cgtcagtttgtaaatgcaaatacaaaccctgcaaggagaagacaaaatcaagaggagagc
aaactttgtaaagatctttccatagcttatgtgtgcagaccaccacccaaggctggtgca
cttttactagagaaatgtgttaaagcaggaataactccagggcccctacttggagaacta
aagagaggcaaggatgtcactctagaagatgggagggttgtatttgctgctgatgtcact
gctcctgatgaccctggcccaatctttattgttattgagataccaacagaggcttacctg
gattccctacttgaatgtccaacatttatgcagtaccaacccagtgaagcatctgacagt
gatttggcagaagttgttgtacatttcacaccctcgcacgtcatggccaatccacgctac
caagagtggatgtcaagattttctccatcaacaaaccacattattgcaaatgatgctagc
tcctgtatgggatcagaagctgtacacaggctccagtataaactaaatcaccttagtgaa
gatctttttcctctcttgcaagacaaaagtatccccattacagaggaagatcaacaagaa
tcaaatgatgacaacacgacagaaaatgttttttccaatgatgaaaaatcttcagaaaag
gagaatgttgagtctaattccttacctaaacacatagtaggtccaactcatcaagcacat
actcttcttatgtaccacatcagaccaaagaagaaaatagacaggtcaaatcgtcttatg
ctgaaacctcaaacatacgtcaaagaatgttatgaagaagagaaatttgagccagccctg
ctcagtgcaaaagcaaaactagaatcaacaaatctgaaagaacatcaagaaaagtctaca
aatcagaattatcctgatgtgatattcttaggaacaggatcttgtataccaaacaaaaca
cgaaatacctctggtttattggttaatataagtgctaataagactctgttaatggactgt
ggtgagggcacatatgggcagcttgtaaggttacttggactagacgaagcagatcaagcc
cttcggaatcttgcagctgtgtatgttagccacttacatgcagaccatcatattggtttc
atcaatattctccttggtagaagaaaggcttttcaacgtgcaggaataactaaaattccc
aagctgcctctcctagcacctcagaaaatattggcatatctcatttcataccatgctaac
tttgaaccagtactccaagacttttctttaattgcaaatcataattttttagcacaaaac
tttacattggaaaaagaccgttatgaggaactatgttcacaactagacatgaagaaaata
gatatgacatatgtgattcactgccccaactcatttggagtggcatggactcatgttgat
ggatggaagcttgtgtattcaggtgacactatgccgtgctctggtctggttgagataggt
cagaattgcaacttgctaatacatgaggcaaccatggaggatgaacttgaagacgatgca
aggataaagacacactcaaccacttcacaagccattcaggttgggcgagacatgaatgct
gagaacattttgctcactcatttttcacagcgttatgccaaagtgcctctttttgaagat
gatctcccagagaaagtaggaattgcatttgacaacatgagagttgctttcaagaaccta
ccaaaactccgtcacttgtatggggcactcgtagctatgttttccgatgattatgacgag
atgctggagaagacagctaagaagagagcagcgagagaaaacttgcggttgcagcttgag
gagttcagcaataaagaggaaattcaggggaacaagcgtgttaagcaggaccagagtatt
gtattatga
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