Penaeus vannamei (Pacific white shrimp): 113829381
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Entry
113829381 CDS
T06111
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113829381
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113829381
Spliceosome [BR:
pvm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113829381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
R3H
Helicase_C
DEAD
HA2_N
Ank_2
AAA_22
Ank_5
ATPase
AAA_19
nSTAND3
T2SSE
Ank
Peptidase_M24_C
FtsK_SpoIIIE
SRP54
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
113829381
NCBI-ProteinID:
XP_070001609
LinkDB
All DBs
Position
34:complement(14290276..14364228)
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AA seq
979 aa
AA seq
DB search
MGRKRPNWRFNEAHVSEELKITVALALKKLMQNGDQKELEFPSSLTSEERKYIHFVAQQM
GFKSKSRGKGSSRYLTVYKKEGSTIMSSEAVVALADSTRSTILGLLQRCPVTNKERQDLL
PATERDRLMNPELRDLSVLRSLGRLTPGPPQIPPPPSLSDLTADARKLPVWNMKDQLLAA
IHHNQVILVCGETGSGKTTQVPQMLLQEASSLGKPCRIFCTQPRRISALTTAERVAAERG
EKVGYTVGYQIRLESKLSPKTLLTFCTNGVLLRTLMGGDSSLASVTHILVDEVHERDRFT
DFLLLVLRDCLHKFRHLKLILMSAALDVNLYAKYFNNCPVIDVPGRCYPVKEYFLEDVLK
YTSYQTPEMLKAYKELEQRQSGQKTAAAWTQQMSQQTLSLGSSAPAPEPRSNIINSEFSK
GTGAELDNTLKEEMDKCIQEAFLTGADEAFSQMMYLIMSENVSPDYQHSETWATALMVAS
GRGRVDIVEQLLALGSSLTLRAANDWTAADWAQSTGQQETLDLLHAYSACEGVDLLTISG
KGMQSSSSSSNHGNVIRGPSTVVPLTELSPEEKRMLDAYHHSVSEEVADVDLVYALCYKI
HTSQPPGAILIFLPGYDDIVNLRDRIIAEEKQYLIGGKYCLFCLHSSMQSSDQKRVFKPS
PPGVRKIILSTNIAETSVTINDVVYVIDAGKMKEVSFDSNLGVSCLRCVWISQASSQQRR
GRAGRCQPGICYHLFSRSRYNNMQHFQTPEILRTPLQELCLHTKLLAPANMPIADFLARA
PEAPAFMVIRNAVQLLKSMDALDGWEDVTELGHHLLDLPLPPRLAKMVITATVLKCLDPV
LTVAACLSYKDPFILPKHPNEKRSATAVRRKFTSGTYSDHMVLLKAFQAWQKACSEGWER
GWCERNFVSGANMEMIHGMRSQVLAQLRGAGFVRARGPGDIRDVNSNSDNWAMVKAALVS
GMYPNLIRVDREQCQLRTQ
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtaaacgtccaaactggcgtttcaatgaagcacacgttagtgaagaactcaag
ataacggtagctctcgccctgaagaaacttatgcaaaatggtgaccaaaaggagctggag
tttccatcttctcttacttctgaagaaaggaagtacatccactttgtggctcaacagatg
gggttcaaaagcaaaagtcgtgggaaagggtcgtcacgctacctgacagtctataagaag
gaaggatcaactatcatgagcagtgaggcagtggtggcactggcggactcaacccgctca
actatcttagggcttctgcagcggtgccctgtgaccaacaaagagaggcaggaccttcta
ccagcaacagaacgtgatcgcctcatgaaccctgaattaagagacctgagtgtcctgcga
tccttgggccgtctcacccctggtccaccgcagatccctcctccaccgagtctgagtgat
ctgacagctgatgccaggaagctccccgtatggaacatgaaggaccagctcttggctgct
atccaccacaaccaggttatactggtgtgtggagagacaggctctggaaaaacaacccag
gtaccccaaatgttacttcaggaagcttcatcgcttggaaaaccttgtcgcattttctgt
acacaacccaggaggatatcggccctgacaacagcagagagagtagcagcagaacgagga
gagaaagttgggtacacagtaggataccaaatcagactagagagcaaattgtctcccaaa
actctcctgacattctgtacaaacggtgtcctgttacggacgctcatggggggagactcc
tcgctagctagtgtcactcatattcttgtcgatgaggttcatgagcgtgacaggttcaca
gacttccttctgcttgtcttgcgagactgcctccacaagttcagacatctgaagctcatc
cttatgtcagctgctctggacgttaacctctatgccaaatacttcaataattgtcctgtt
atcgatgttcctggaaggtgctacccagttaaagaatacttcctggaggatgttttgaaa
tataccagctaccaaacacctgagatgctgaaggcatataaagagctggagcagagacag
agtggccagaagactgcagcagcttggacacagcagatgtctcagcagacactaagctta
gggtccagtgcacctgcaccagaacctagaagcaacatcataaatagtgaattcagcaag
ggtactggagctgagctcgataatactttgaaagaagaaatggacaaatgcattcaagaa
gcttttctcacgggtgccgatgaagcattctctcagatgatgtacttaatcatgtcagaa
aatgtgtctccagattatcagcactctgaaacctgggcaacagcacttatggtagcctct
ggccgtggtcgtgtcgacatagtggagcagttgcttgccttaggctcttctctcaccttg
cgtgcagcaaacgactggactgcagctgactgggctcagtcaacaggacagcaggagacc
cttgatttgctgcatgcctatagtgcctgtgagggagttgacttgctaaccatctcagga
aagggaatgcaaagcagcagctcctcctcaaatcatgggaatgtcatcagaggtccttca
acagtggtgcccctaactgaactctcgccagaggaaaagcgaatgctggatgcataccac
cactcagtatcagaggaagtggctgatgtagacctggtgtatgctctgtgttacaagatt
cacacatctcagccccctggtgcaatcctcatcttcctaccgggatatgacgatattgtc
aatctccgtgatcgcatcatagctgaagagaagcagtatctgattggtggaaaatactgt
ctcttttgcctccactccagcatgcagtcaagtgaccagaaacgtgtcttcaaaccttcg
ccacctggtgttcgcaagatcatactttctaccaacattgcagaaaccagtgtcacaata
aatgatgtggtgtatgtaatagatgctggcaagatgaaagaggtgagttttgactcaaac
ttgggtgtgtcttgcttgaggtgcgtatggatatcccaggcctcaagtcagcagaggagg
ggccgggctggcaggtgtcagccaggcatctgctatcacctcttctcacgcagccgctac
aacaacatgcagcacttccagacaccagagattttgaggacaccactgcaggaactttgt
cttcataccaaacttctagctccagccaacatgcctattgcagacttcttagcaagagca
ccagaggcaccagcatttatggtcatcagaaatgctgttcagttgctcaagagcatggat
gccctagatggctgggaggatgtcacagagttgggccatcacctgttggatctgccacta
ccaccacgcctggccaaaatggtcatcacggcaacagttctgaagtgcctcgatccagtg
ctcactgtagctgcctgcctctcctacaaggaccccttcatactaccgaagcacccaaat
gagaagagaagtgcaactgctgtacgcaggaagttcacatcagggacttacagcgaccat
atggttctcctaaaggcattccaggcttggcagaaggcctgtagtgaaggctgggaaaga
ggctggtgtgagaggaactttgtctctggagccaacatggagatgatccacggaatgcgg
tcgcaagtgctagcccagctgcgaggagcaggctttgtgcgagctcgtggacctggagat
attagggatgtgaatagcaacagtgacaactgggccatggtgaaggcggctcttgtatct
gggatgtacccaaatctcatcagggtcgaccgagaacagtgtcagctgagaacacagtaa
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